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T cells orchestrate adaptive immune responses upon activation. T cell activation requires sufficiently strong binding of T cell receptors on their surface to short peptides derived from foreign proteins bound to protein products of the…

Biological Physics · Physics 2016-06-22 Andrej Kosmrlj , Mehran Kardar , Arup K. Chakraborty

We propose an alternative mechanism for intracellular cargo transport which results from motor induced longitudinal fluctuations of cytoskeletal microtubules (MT). The longitudinal fluctuations combined with transient cargo binding to the…

Soft Condensed Matter · Physics 2007-05-23 Igor M. Kulić , Philip C. Nelson

Cell migration is a fundamental process for life and is highly dependent on the dynamical and mechanical properties of the cytoskeleton. Intensive physical and biochemical crosstalk between actin, microtubules, and intermediate filaments…

Biological Physics · Physics 2024-01-17 James P. Conboy , Irene Istúriz Petitjean , Anouk van der Net , Gijsje H. Koenderink

The migratory dynamics of cells in physiological processes, ranging from wound healing to cancer metastasis, rely on contact-mediated cell-cell interactions. These interactions play a key role in shaping the stochastic trajectories of…

The emerging field of immunometabolism has underscored the central role of metabolic pathways in orchestrating immune cell function. Far from being passive background processes, metabolic activities actively regulate key immune responses.…

Cell Behavior · Quantitative Biology 2025-06-04 Sunayana Malla , Nabia Shahreen , Rajib Saha

Cytotoxic T lymphocytes eliminate infected or malignant cells, safeguarding surrounding tissues. Although experimental and systems-immunology studies have cataloged many molecular and cellular actors involved in an immune response, the…

Biological Physics · Physics 2026-03-04 Obinna A. Ukogu , Zachary Montague , Grégoire Altan-Bonnet , Armita Nourmohammad

The interaction between actin filaments and microtubules is crucial for many eukaryotic cellular processes, such as, among others, cell polarization, cell motility and cellular wound healing. The importance of this interaction has long been…

Subcellular Processes · Quantitative Biology 2020-09-28 Marco Saltini , Bela M. Mulder

In this work we adopt a statistical mechanics approach to investigate basic, systemic features exhibited by adaptive immune systems. The lymphocyte network made by B-cells and T-cells is modeled by a bipartite spin-glass, where, following…

Cell Behavior · Quantitative Biology 2015-06-04 Elena Agliari , Adriano Barra , Silvia Bartolucci , Andrea Galluzzi , Francesco Guerra , Francesco Moauro

Chemotaxis enables cells to systematically approach distant targets that emit a diffusible guiding substance. However, the visual observation of an encounter between a cell and a target does not necessarily indicate the presence of a…

Quantitative Methods · Quantitative Biology 2021-06-22 Claus Metzner , Franziska Hörsch , Christoph Mark , Tina Czerwinski , Alexander Winterl , Caroline Voskens , Ben Fabry

Cells are strongly out-of-equilibrium systems driven by continuous energy supply. They carry out many vital functions requiring active transport of various ingredients and organelles, some being small, others being large. The cytoskeleton,…

Biological Physics · Physics 2017-09-20 Cecile Appert-Rolland , Maximilian Ebbinghaus , Ludger Santen

Patterns in complex systems store hidden information of the system which is needed to be explored. We present a simple model of cytokine and T-cells interaction and studied the model within stochastic framework by constructing Master…

Populations and Evolution · Quantitative Biology 2022-09-23 Moirangthem Shubhakanta Singh , Mairembam Kelvin Singh , R. K. Brojen Singh

This paper investigates dynamic behaviors of the tumor-immune system perturbed by environmental noise. The model describes the response of the cytotoxic T lymphocyte (CTL) to the growth of an immunogenic tumour. The main methods are…

Probability · Mathematics 2019-02-06 Xiaoyue Li , Guoting Song , Yang Xia , Chenggui Yuan

Mechanical cues from the extracellular microenvironment play a central role in regulating the structure, function and fate of living cells. Nevertheless, the precise nature of the mechanisms and processes underlying this crucial cellular…

Biological Physics · Physics 2015-06-23 Ariel Livne , Eran Bouchbinder , Benjamin Geiger

Microtubules self-organize to form part of the cellular cytoskeleton. They give cells their shape and play a crucial role in cell division and intracellular transport. Strikingly, microtubules driven by motor proteins reorganize into stable…

Adaptation and Self-Organizing Systems · Physics 2024-05-16 Nikita Frolov , Bram Bijnens , Daniel Ruiz-Reynés , Lendert Gelens

The immunological synapse is a patterned collection of different types of receptors and ligands that forms in the intercellular junction between T Cells and antigen presenting cells (APCs) during recognition. The synapse is implicated in…

Soft Condensed Matter · Physics 2009-11-10 Subhadip Raychaudhuri , Arup K. Chakraborty , Mehran Kardar

The homeostasis of epithelial tissue relies on a balance between the self-renewal of stem cell populations, cellular differentiation, and loss. Although this balance needs to be tightly regulated to avoid pathologies, such as tumor growth,…

Biological Physics · Physics 2024-04-10 Johannes C. Krämer , Edouard Hannezo , Gerhard Gompper , Jens Elgeti

Intracellular transport is essential for maintaining proper cellular function in most eukaryotic cells, with perturbations in active transport resulting in several types of disease. Efficient delivery of critical cargos to specific…

Biological Physics · Physics 2016-08-16 David Ando , Nickolay Korabel , Kerwyn Casey Huang , Ajay Gopinathan

Biomolecular motor proteins that generate forces by consuming chemical energy obtained from ATP hydrolysis are pivotal for organizing broad cytoskeletal structures in living cells. The control of such cytoskeletal structures benefits…

Soft Condensed Matter · Physics 2021-12-30 Shunya Araki , Kazusa Beppu , Arif Md. Rashedul Kabir , Akira Kakugo , Yusuke T. Maeda

Many cells contain non-centrosomal arrays of microtubules (MT), but the assembly, organisation and function of these arrays are poorly understood. We present the first theoretical model for the non-centrosomal MT cytoskeleton in…

Subcellular Processes · Quantitative Biology 2015-09-29 Philipp Khuc Trong , Hélène Doerflinger , Jörn Dunkel , Daniel St. Johnston , Raymond E. Goldstein

Signal transducers and activators of transcription (STATs) are key molecular determinants of T cell fate and effector function. A number of inflammatory diseases are characterized by an altered balance of T cell phenotypes and cytokine…