Related papers: On the smallest trees with the same restricted $U$…
Let $G$ be a graph and let $m_{ij}(G)$, $i,j\ge 1$, be the number of edges $uv$ of $G$ such that $\{d_v(G), d_u(G)\} = \{i,j\}$. The {\em $M$-polynomial} of $G$ is introduced with $\displaystyle{M(G;x,y) = \sum_{i\le j} m_{ij}(G)x^iy^j}$.…
Rooted trees are essential for describing numerical schemes via the so-called B-series. They have also been used extensively in rough analysis for expanding solutions of singular Stochastic Partial Differential Equations (SPDEs). When one…
Many hard algorithmic problems dealing with graphs, circuits, formulas and constraints admit polynomial-time upper bounds if the underlying graph has small treewidth. The same problems often encourage reducing the maximal degree of vertices…
Deciding whether there is a single tree -a supertree- that summarizes the evolutionary information in a collection of unrooted trees is a fundamental problem in phylogenetics. We consider two versions of this question: agreement and…
In this paper, we redesign and simplify an algorithm due to Remy et al. for the generation of rooted planar trees that satisfies a given partition of degrees. This new version is now optimal in terms of random bit complexity, up to a…
Phylogenetic networks generalize phylogenetic trees, and have been introduced in order to describe evolution in the case of transfer of genetic material between coexisting species. There are many classes of phylogenetic networks, which can…
The edge-reconstruction number ern$(G)$ of a graph $G$ is equal to the minimum number of edge-deleted subgraphs $G-e$ of $G$ which are sufficient to determine $G$ up to isomorphsim. Building upon the work of Molina and using results from…
Invariants for complicated objects such as those arising in phylogenetics, whether they are invariants as matrices, polynomials, or other mathematical structures, are important tools for distinguishing and working with such objects. In this…
The usual methods for root finding of polynomials are based on the iteration of a numerical formula for improvement of successive estimations. The unpredictable nature of the iterations prevents to search roots inside a pre-specified region…
The family of trees with palindromic characteristic polynomials is characterized. Large families of graphs with this property are found as well.
Arboreal networks are a generalization of rooted trees, defined by keeping the tree-like structure, but dropping the requirement for a single root. Just as the class of cographs is precisely the class of undirected graphs that can be…
We raise some questions about graph polynomials, highlighting concepts and phenomena that may merit consideration in the development of a general theory. Our questions are mainly of three types: When do graph polynomials have reduction…
In this note we consider roots of multivariate polynomials over a finite grid. When given information on the leading monomial with respect to a fixed monomial ordering, the footprint bound [8, 5] provides us with an upper bound on the…
We explore the relationship between polynomial functors and (rooted) trees. In the first part we use polynomial functors to derive a new convenient formalism for trees, and obtain a natural and conceptual construction of the category…
In this paper we show how to find nearly optimal embeddings of large trees in several natural classes of graphs. The size of the tree T can be as large as a constant fraction of the size of the graph G, and the maximum degree of T can be…
The AHU-algorithm solves the computationally difficult graph isomorphism problem for rooted trees, and does so with a linear time complexity. Although the AHU-algorithm has remained state of the art for almost 50 years, it has been…
A vertex subset of a graph is called a distance-$k$ independent set if the distance between any two of its distinct vertices is at least $k + 1$. For all $n,k \geq 1$, we determine the minimum possible number of inclusion-wise maximal…
The $\ell$-deck of a graph $G$ is the multiset of all induced subgraphs of $G$ on $\ell$ vertices. We say that a graph is reconstructible from its $\ell$-deck if no other graph has the same $\ell$-deck. In 1957, Kelly showed that every tree…
This note derives asymptotic upper and lower bounds for the number of planted plane trees on $n$ nodes assigned labels from the set $\{1,2,\ldots, k\}$ with the restriction that on any path from the root to a leaf, the labels must strictly…
For a non-negative integer $\ell$, the $\ell$-leaf power of a tree $T$ is a simple graph $G$ on the leaves of $T$ such that two vertices are adjacent in $G$ if and only if their distance in $T$ is at most $\ell$. We provide a polynomial…