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We develop a network in which the natural numbers are the vertices. We use the decomposition of natural numbers by prime numbers to establish the connections. We perform data collapse and show that the degree distribution of these networks…

Statistical Mechanics · Physics 2009-11-10 Gilberto Corso

Rooted acyclic graphs appear naturally when the phylogenetic relationship of a set $X$ of taxa involves not only speciations but also recombination, horizontal transfer, or hybridization, that cannot be captured by trees. A variety of…

Populations and Evolution · Quantitative Biology 2022-04-29 Marc Hellmuth , David Schaller , Peter F. Stadler

A simple model for the formation of a complex organism is introduced. Individuals can communicate and specialize, leading to an increase in productivity. If there are limits to the capacity of individuals to communicate with other…

adap-org · Physics 2009-10-30 Barbara Drossel

We study the evolution of the network properties of a populated network embedded in a genotype space characterised by either a low or a high number of potential links, with particular emphasis on the connectivity and clustering. Evolution…

Statistical Mechanics · Physics 2007-05-23 Paul Anderson , Henrik Jeldtoft Jensen

A simple three-dimensional model of a fluid whose constituent particles interact via a short range attractive and long range repulsive potential is used to model the aggregation into large spherical-like clusters made up of hundreds of…

Soft Condensed Matter · Physics 2025-02-11 Antonio Díaz-Pozuelo , Diego González-Salgado , Enrique Lomba

Globular clusters are stellar dynamical systems which evolve on stellar evolutionary and both internal and external dynamical timescales. Quantitative comparison of cluster properties with realistic evolutionary dynamical models is becoming…

Astrophysics · Physics 2007-05-23 Gerard Gilmore

Clustering aims to divide a set of points into groups. The current paradigm assumes that the grouping is well-defined (unique) given the probability model from which the data is drawn. Yet, recent experiments have uncovered several…

Machine Learning · Statistics 2024-06-25 Mireille Boutin , Evzenie Coupkova

A dense-enough gas-accumulation evolves, over a few Myr of intensifying star formation, to an embedded cluster. If it contains a sufficient amount of mass, O stars form and explosively expel the remaining gas, whereas poorer clusters reduce…

Astrophysics · Physics 2007-05-23 Pavel Kroupa

Collective movement is observed widely in nature, where individuals interact locally to produce globally ordered, coherent motion. In typical models of collective motion, each individual takes the average direction of multiple neighbors,…

Quantitative Methods · Quantitative Biology 2026-01-23 Yogesh Kumar KC , Arshed Nabeel , Srikanth Iyer , Vishwesha Guttal

Actively propelled particles undergoing dissipative collisions are known to develop a state of spatially distributed coherently moving clusters. For densities larger than a characteristic value clusters grow in time and form a stationary…

Soft Condensed Matter · Physics 2013-04-23 Christoph A. Weber , Florian Thüroff , Erwin Frey

We perform a numerical analysis of a recent introduced model for describing collective movement in alarmed animals groups. This model, derived from a position-based interaction and a limited attention field, displays a non-equilibrium phase…

Biological Physics · Physics 2019-03-08 A. M. Calvão , E. Brigatti

The problem of clustering is considered, for the case when each data point is a sample generated by a stationary ergodic process. We propose a very natural asymptotic notion of consistency, and show that simple consistent algorithms exist,…

Machine Learning · Computer Science 2013-05-01 Daniil Ryabko

The problem of clustering is considered, for the case when each data point is a sample generated by a stationary ergodic process. We propose a very natural asymptotic notion of consistency, and show that simple consistent algorithms exist,…

Machine Learning · Computer Science 2010-05-31 Daniil Ryabko

We build networks of genetic similarity in which the nodes are organisms sampled from biological populations. The procedure is illustrated by constructing networks from genetic data of a marine clonal plant. An important feature in the…

Populations and Evolution · Quantitative Biology 2008-01-23 E. Hernandez-Garcia , A. F. Rozenfeld , V. M. Eguiluz , S. Arnaud-Haond , C. M. Duarte

Elucidating emergent regularities in intriguing crowd dynamics is a fundamental scientific problem arising in multiple fields. In this work, based on the social force model, we simulate the typical scenario of collective escape towards a…

Soft Condensed Matter · Physics 2021-05-11 Chen Cheng , Jinglai Li , Zhenwei Yao

Computer modelling for evolutionary systems consists in: 1) to store in the memory the individual features of each member of a large population; and 2) to update the whole system repeatedly, as time goes by, according to some prescribed…

Statistical Mechanics · Physics 2007-05-23 Paulo Murilo Castro de Oliveira

Motivated by aggregation phenomena in gliding bacteria, we study collective motion in a twodimensional model of active, self-propelled rods interacting through volume exclusion. In simulations with individual particles, we find that…

Soft Condensed Matter · Physics 2009-11-11 F. Peruani , A. Deutsch , M. Baer

Order can spontaneously emerge from seemingly noisy interactions between biological agents, like a flock of birds changing their direction of flight in unison, without a leader or an external cue. We are interested in the generic conditions…

Biological Physics · Physics 2021-03-09 Carsten T. van de Kamp , George Dadunashvili , Johan L. A. Dubbeldam , Timon Idema

Clustering is a widely used unsupervised learning method for finding structure in the data. However, the resulting clusters are typically presented without any guarantees on their robustness; slightly changing the used data sample or…

Machine Learning · Statistics 2017-01-02 Andreas Henelius , Kai Puolamäki , Henrik Boström , Panagiotis Papapetrou

In nature self-organized systems as flock of birds, school of fishes or herd of sheeps have to deal with the presence of external agents such as predators or leaders which modify their internal dynamic. Such situations take into account a…

Biological Physics · Physics 2012-10-15 Giacomo Albi , Lorenzo Pareschi