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A major challenge in next-generation genome sequencing (NGS) is to assemble massive overlapping short reads that are randomly sampled from DNA fragments. To complete assembling, one needs to finish a fundamental task in many leading…

Genomics · Quantitative Biology 2015-05-26 Yang Li , XifengYan

A cheap method for constructing canonical models and complete moduli for complex projective varieties with a structure called "rational plurifibration" is given. A result about semistable reduction (whose nature is slightly different from…

Algebraic Geometry · Mathematics 2007-05-23 Dan Abramovich

Lookup tables (finite maps) are a ubiquitous data structure. In pure functional languages they are best represented using trees instead of hash tables. In pure functional languages within constructive logic, without a primitive integer…

Logic in Computer Science · Computer Science 2023-09-06 Andrew W Appel , Xavier Leroy

This paper proposes superblock pruning (SP) during top-k online document retrieval for learned sparse representations. SP structures the sparse index as a set of superblocks on a sequence of document blocks and conducts a superblock-level…

Information Retrieval · Computer Science 2026-02-04 Parker Carlson , Wentai Xie , Shanxiu He , Tao Yang

Reduced k-means clustering is a method for clustering objects in a low-dimensional subspace. The advantage of this method is that both clustering of objects and low-dimensional subspace reflecting the cluster structure are simultaneously…

Statistics Theory · Mathematics 2014-02-14 Yoshikazu Terada

Hashing has recently sparked a great revolution in cross-modal retrieval because of its low storage cost and high query speed. Recent cross-modal hashing methods often learn unified or equal-length hash codes to represent the multi-modal…

Computer Vision and Pattern Recognition · Computer Science 2019-09-13 Xin Liu , Zhikai Hu , Haibin Ling , Yiu-ming Cheung

(Im)balance indices can be used to quantify the (im)balance of trees by assigning numerical scores to them. An easy way to generate a new index is to construct a compound index, e.g., a linear combination of established indices. Two of the…

Populations and Evolution · Quantitative Biology 2026-04-20 Linda Knüver , Mareike Fischer

A tableau calculus is proposed, based on a compressed representation of clauses, where literals sharing a similar shape may be merged. The inferences applied on these literals are fused when possible, which reduces the size of the proof. It…

Logic in Computer Science · Computer Science 2018-01-15 Michael Peter Lettmann , Nicolas Peltier

We present two different strategies to extend the classical multi-label chaining approach to handle imprecise probability estimates. These estimates use convex sets of distributions (or credal sets) in order to describe our uncertainty…

Machine Learning · Statistics 2021-07-21 Yonatan Carlos Carranza Alarcón , Sébastien Destercke

The short note describes the chart parser for multimodal type-logical grammars which has been developed in conjunction with the type-logical treebank for French. The chart parser presents an incomplete but fast implementation of proof…

Computation and Language · Computer Science 2018-04-09 Richard Moot

We present MultivariatePowerSeries, a Maple library introduced in Maple 2021, providing a variety of methods to study formal multivariate power series and univariate polynomials over such series. This library offers a simple and easy-to-use…

Symbolic Computation · Computer Science 2021-06-30 Mohammadali Asadi , Alexander Brandt , Mahsa Kazemi , Marc Moreno Maza , Erik Postma

Document listing on string collections is the task of finding all documents where a pattern appears. It is regarded as the most fundamental document retrieval problem, and is useful in various applications. Many of the fastest-growing…

Data Structures and Algorithms · Computer Science 2019-02-21 Dustin Cobas , Gonzalo Navarro

We consider the problem of communication efficient secure distributed matrix multiplication. The previous literature has focused on reducing the number of servers as a proxy for minimizing communication costs. The intuition being, that the…

Information Theory · Computer Science 2022-06-10 Roberto Assis Machado , Rafael G. L. D'Oliveira , Salim El Rouayheb , Daniel Heinlein

To cater to the needs of (Zero Knowledge) proofs for (mathematical) proofs, we describe a method to transform formal sentences in 2x2-matrices over multivariate polynomials with integer coefficients, such that usual proof-steps like…

Logic · Mathematics 2025-09-17 Mihai Prunescu

We present the pseudo-particle multipole method (P2M2), a new method to handle multipole expansion in fast multipole method and treecode. This method uses a small number of pseudo-particles to express multipole expansion. With this method,…

Astrophysics · Physics 2007-05-23 Atsushi Kawai , Junichiro Makino

Random Indexing (RI) K-tree is the combination of two algorithms for clustering. Many large scale problems exist in document clustering. RI K-tree scales well with large inputs due to its low complexity. It also exhibits features that are…

Information Retrieval · Computer Science 2010-02-02 Christopher M. De Vries , Lance De Vine , Shlomo Geva

With the aim to propose a non parametric hypothesis test, this paper carries out a study on the Matching Error (ME), a comparison index of two partitions obtained from the same data set, using for example two clustering methods. This index…

Methodology · Statistics 2019-07-31 Mathias Bourel , Badih Ghattas , Meliza González

Recently, Andrews and El Bachraoui considered the number of integer partitions whose smallest part is repeated exactly $k$ times and the remaining parts are not repeated. They presented several interesting results and posed questions…

Combinatorics · Mathematics 2025-05-15 Dandan Chen , Rong Chen , Mengjie Zhao

The $k^2$-tree is a compact data structure designed to efficiently store sparse binary matrices by leveraging both sparsity and clustering of nonzero elements. This representation supports efficiently navigational operations and complex…

Data Structures and Algorithms · Computer Science 2025-05-19 Gabriel Carmona , Giovanni Manzini

Multiple hypothesis testing is widely used to evaluate scientific studies involving statistical tests. However, for many of these tests, p-values are not available and are thus often approximated using Monte Carlo tests such as permutation…

Applications · Statistics 2018-10-17 Axel Gandy , Georg Hahn