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The mining of pattern subgraphs, known as motifs, is a core task in the field of graph mining. Edges in real-world networks often have timestamps, so there is a need for temporal motif mining. A temporal motif is a richer structure that…

Databases · Computer Science 2025-07-29 Yunjie Pan , Omkar Bhalerao , C. Seshadhri , Nishil Talati

Complex systems frequently exhibit multi-way, rather than pairwise, interactions. These group interactions cannot be faithfully modeled as collections of pairwise interactions using graphs and instead require hypergraphs. However, methods…

Discrete Mathematics · Computer Science 2024-11-25 Jason Niu , Ilya D. Amburg , Sinan G. Aksoy , Ahmet Erdem Sarıyüce

Counts of small subgraphs, or graphlet counts, are widely applicable to measure graph similarity. Computing graphlet counts can be computationally expensive and may pose obstacles in network analysis. We study the role of cliques in…

Social and Information Networks · Computer Science 2024-01-09 Anthony Bonato , Zhiyuan Zhang

Motifs are patterns of subgraphs of complex networks. We studied the impact of such patterns of connectivity on the level of correlated, or synchronized, spiking activity among pairs of cells in a recurrent network model of integrate and…

Neurons and Cognition · Quantitative Biology 2015-06-05 Yu Hu , James Trousdale , Kresimir Josic , Eric Shea-Brown

Graph motif, defined as the microstructure that appears repeatedly in a large graph, reveals important topological characteristics of the large graph and has gained increasing attention in power system analysis regarding reliability,…

Systems and Control · Electrical Eng. & Systems 2024-12-10 Yiyan Li , Zhenghao Zhou , Jian Ping , Xiaoyuan Xu , Zheng Yan , Jianzhong Wu

We address the problem of understanding the variable abundance of 3-node and 4-node subgraphs (motifs) in complex networks from a dynamical point of view. As a criterion in the determination of the functional significance of a n-node…

Biological Physics · Physics 2009-11-13 Ivano Lodato , Stefano Boccaletti , Vito Latora

Network community detection is a hot research topic in network analysis. Although many methods have been proposed for community detection, most of them only take into consideration the lower-order structure of the network at the level of…

Social and Information Networks · Computer Science 2019-06-12 Pei-Zhen Li , Ling Huang , Chang-Dong Wang , Jian-Huang Lai

Subgraph counting aims to count occurrences of a template T in a given network G(V, E). It is a powerful graph analysis tool and has found real-world applications in diverse domains. Scaling subgraph counting problems is known to be memory…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-10-06 Langshi Chen , Jiayu Li , Ariful Azad , Cenk Sahinalp , Madhav Marathe , Anil Vullikanti , Andrey Nikolaev , Egor Smirnov , Ruslan Israfilov , Judy Qiu

The problem of calculating the frequencies of network motifs on three and four nodes in large networks is considered. Telecommunications networks, cell molecular networks are investigated. The sizes of the investigated networks are hundreds…

Social and Information Networks · Computer Science 2020-01-08 M. N. Yudina , V. N. Zadorozhnyi , E. B. Yudin

We introduce graph motif parameters, a class of graph parameters that depend only on the frequencies of constant-size induced subgraphs. Classical works by Lov\'asz show that many interesting quantities have this form, including, for fixed…

Data Structures and Algorithms · Computer Science 2017-05-05 Radu Curticapean , Holger Dell , Dániel Marx

A determinant property of the structure of a biological network is the distribution of local connectivity patterns, i.e., network motifs. In this work, a method for creating directed, unweighted networks while promoting a certain…

Social and Information Networks · Computer Science 2016-07-29 Tuomo Mäki-Marttunen

We introduce Tiered Sampling, a novel technique for approximate counting sparse motifs in massive graphs whose edges are observed in a stream. Our technique requires only a single pass on the data and uses a memory of fixed size $M$, which…

Data Structures and Algorithms · Computer Science 2017-10-06 Lorenzo De Stefani , Erisa Terolli , Eli Upfal

Identifying frequent subgraphs, also called network motifs, is crucial in analyzing and predicting properties of real-world networks. However, finding large commonly-occurring motifs remains a challenging problem not only due to its NP-hard…

Machine Learning · Computer Science 2024-02-23 Rex Ying , Tianyu Fu , Andrew Wang , Jiaxuan You , Yu Wang , Jure Leskovec

Graphlet counting is an important problem as it has numerous applications in several fields, including social network analysis, biological network analysis, transaction network analysis, etc. Most of the practical networks are dynamic. A…

Data Structures and Algorithms · Computer Science 2023-08-29 Hriday G , Pranav Saikiran Sista , Apurba Das

Subgraph counting is a fundamental task that underpins several network analysis methodologies, including community detection and graph two-sample tests. Counting subgraphs is a computationally intensive problem. Substantial research has…

Combinatorics · Mathematics 2025-11-19 Feng Yu , Mingao Yuan

Subgraph counting is a fundamental task for analyzing structural patterns in graph-structured data, with important applications in domains such as computational biology and social network analysis, where recurring motifs reveal functional…

Machine Learning · Computer Science 2025-12-02 Shubhajit Roy , Shrutimoy Das , Binita Maity , Anant Kumar , Anirban Dasgupta

Characterizing motif (i.e., locally connected subgraph patterns) statistics is important for understanding complex networks such as online social networks and communication networks. Previous work made the strong assumption that the graph…

Social and Information Networks · Computer Science 2015-02-25 Pinghui Wang , John C. S. Lui , Don Towsley

One of the most important concepts in biological network analysis is that of network motifs, which are patterns of interconnections that occur in a given network at a frequency higher than expected in a random network. In this work we are…

Discrete Mathematics · Computer Science 2020-05-29 Diego P Rubert , Eloi Araujo , Marco A Stefanes , Jens Stoye , Fábio V Martinez

Clustering analysis has been widely used in trust evaluation on various complex networks such as wireless sensors networks and online social networks. Spectral clustering is one of the most commonly used algorithms for graph-structured data…

Social and Information Networks · Computer Science 2021-12-03 Gang Mei , Jingzhi Tu , Lei Xiao , Francesco Piccialli

A great variety of complex systems ranging from user interactions in communication networks to transactions in financial markets can be modeled as temporal graphs, which consist of a set of vertices and a series of timestamped and directed…

Social and Information Networks · Computer Science 2020-07-29 Jingjing Wang , Yanhao Wang , Wenjun Jiang , Yuchen Li , Kian-Lee Tan