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The classic exact pattern matching problem, given two strings -- a pattern $P$ of length $m$ and a text $T$ of length $n$ -- asks whether $P$ occurs as a substring of $T$. A property tester for the problem needs to distinguish (with high…

Data Structures and Algorithms · Computer Science 2025-10-21 Ce Jin , Tomasz Kociumaka

We consider the problem of identifying tandem scattered subsequences within a string. Our algorithm identifies a longest subsequence which occurs twice without overlap in a string. This algorithm is based on the Hunt-Szymanski algorithm,…

Data Structures and Algorithms · Computer Science 2020-06-26 Luís M. S. Russo , Alexandre P. Francisco

Let $T=t_0 ... t_{n-1}$ be a text and $P = p_0 ... p_{m-1}$ a pattern taken from some finite alphabet set $\Sigma$, and let $\dist$ be a metric on $\Sigma$. We consider the problem of calculating the sum of distances between the symbols of…

Data Structures and Algorithms · Computer Science 2008-02-12 Klim Efremenko , Ely Porat

The parameterized matching problem is a variant of string matching, which is to search for all parameterized occurrences of a pattern $P$ in a text $T$. In considering matching algorithms, the combinatorial natures of strings, especially…

Data Structures and Algorithms · Computer Science 2023-06-21 Haruki Ideguchi , Diptarama Hendrian , Ryo Yoshinaka , Ayumi Shinohara

We study here the so called subsequence pattern matching also known as hidden pattern matching in which one searches for a given pattern $w$ of length $m$ as a subsequence in a random text of length $n$. The quantity of interest is the…

Probability · Mathematics 2020-03-24 Svante Janson , Wojciech Szpankowski

Detecting and counting copies of permutation patterns are fundamental algorithmic problems, with applications in the analysis of rankings, nonparametric statistics, and property testing tasks such as independence and quasirandomness…

Data Structures and Algorithms · Computer Science 2026-05-07 Michal Opler

The classic string indexing problem is to preprocess a string S into a compact data structure that supports efficient pattern matching queries. Typical queries include existential queries (decide if the pattern occurs in S), reporting…

Data Structures and Algorithms · Computer Science 2021-02-05 Philip Bille , Inge Li Gørtz , Max Rishøj Pedersen , Teresa Anna Steiner

Two strings are considered to have parameterized matching when there exists a bijection of the parameterized alphabet onto itself such that it transforms one string to another. Parameterized matching has application in software duplication…

Data Structures and Algorithms · Computer Science 2024-12-03 Apurba Saha , Iftekhar Hakim Kaowsar , Mahdi Hasnat Siyam , M. Sohel Rahman

In the $k$-mismatch problem, given a pattern and a text of length $n$ and $m$ respectively, we have to find if the text has a sub-string with a Hamming distance of at most $k$ from the pattern. This has been studied in the classical setting…

Quantum Physics · Physics 2026-01-13 Ruhan Habib , Shadman Shahriar

We consider the longest common subsequence (LCS) problem with the restriction that the common subsequence is required to consist of at least $k$ length substrings. First, we show an $O(mn)$ time algorithm for the problem which gives a…

Data Structures and Algorithms · Computer Science 2017-02-07 Yohei Ueki , Diptarama , Masatoshi Kurihara , Yoshiaki Matsuoka , Kazuyuki Narisawa , Ryo Yoshinaka , Hideo Bannai , Shunsuke Inenaga , Ayumi Shinohara

We present an algorithm that takes as input an $n$-vertex planar graph $G$ and a $k$-vertex pattern graph $P$, and computes the number of (induced) copies of $P$ in $G$ in $2^{O(k/\log k)}n^{O(1)}$ time. If $P$ is a matching, independent…

Data Structures and Algorithms · Computer Science 2019-04-26 Jesper Nederlof

The Cartesian tree of a sequence captures the relative order of the sequence's elements. In recent years, Cartesian tree matching has attracted considerable attention, particularly due to its applications in time series analysis. Consider a…

Data Structures and Algorithms · Computer Science 2026-02-10 Panagiotis Charalampopoulos , Jonas Ellert , Manal Mohamed

Finding the most similar subsequences between two multidimensional time series has many applications: e.g. capturing dependency in stock market or discovering coordinated movement of baboons. Considering one pattern occurring in one time…

Machine Learning · Computer Science 2025-05-19 Thanadej Rattanakornphan , Piyanon Charoenpoonpanich , Chainarong Amornbunchornvej

Given a pattern x of length m and a text y of length n, both over an ordered alphabet, the order-preserving pattern matching problem consists in finding all substrings of the text with the same relative order as the pattern. It is an…

Data Structures and Algorithms · Computer Science 2015-01-19 Simone Faro , Oğuzhan Külekci

The longest common subsequence (LCS) is a fundamental problem in string processing which has numerous algorithmic studies, extensions, and applications. A sequence $u_1, \ldots, u_f$ of $f$ strings s said to be an ($f$-)segmentation of a…

Data Structures and Algorithms · Computer Science 2025-02-27 Yuki Yonemoto , Takuya Mieno , Shunsuke Inenaga , Ryo Yoshinaka , Ayumi Shinohara

A new numerical characterization of symbolic sequences is proposed. The partition of sequence based on Ke and Tong algorithm is a starting point. Algorithm decomposes original sequence into set of distinct subsequences - a patterns. The set…

Quantitative Methods · Quantitative Biology 2011-09-08 B. Kozarzewski

In this paper we describe a data structure that supports pattern matching queries on a dynamically arriving text over an alphabet ofconstant size. Each new symbol can be prepended to $T$ in O(1) worst-case time. At any moment, we can report…

Data Structures and Algorithms · Computer Science 2013-07-09 Gregory Kucherov , Yakov Nekrich

The problem of approximate string matching is important in many different areas such as computational biology, text processing and pattern recognition. A great effort has been made to design efficient algorithms addressing several variants…

Data Structures and Algorithms · Computer Science 2008-07-29 Dimitris Papamichail , Georgios Papamichail

Two strings of the same length are said to Cartesian-tree match (CT-match) if their Cartesian-trees are isomorphic [Park et al., TCS 2020]. Cartesian-tree matching is a natural model that allows for capturing similarities of numerical…

Data Structures and Algorithms · Computer Science 2026-01-01 Taketo Tsujimoto , Yuki Yonemoto , Hiroki Shibata , Takuya Mieno , Yuto Nakashima , Shunsuke Inenaga

Approximate Pattern Matching is among the most fundamental string-processing tasks. Given a text $T$ of length $n$, a pattern $P$ of length $m$, and a threshold $k$, the task is to identify the fragments of $T$ that are at distance at most…

Data Structures and Algorithms · Computer Science 2024-10-10 Tomasz Kociumaka , Jakob Nogler , Philip Wellnitz