Related papers: Computing Covers under Substring Consistent Equiva…
A tessellation of a graph is a partition of its vertices into vertex disjoint cliques. A tessellation cover of a graph is a set of tessellations that covers all of its edges, and the tessellation cover number, denoted by $T(G)$, is the size…
Motivated by computing duplication patterns in sequences, a new fundamental problem called the longest subsequence-repeated subsequence (LSRS) is proposed. Given a sequence $S$ of length $n$, a letter-repeated subsequence is a subsequence…
This paper studies Time Series Extrinsic Regression (TSER): a regression task of which the aim is to learn the relationship between a time series and a continuous scalar variable; a task closely related to time series classification (TSC),…
We give a nearly optimal sublinear-time algorithm for approximating the size of a minimum vertex cover in a graph G. The algorithm may query the degree deg(v) of any vertex v of its choice, and for each 1 <= i <= deg(v), it may ask for the…
Calculating the length of a longest common subsequence (LCS) of two strings $A$ and $B$ of length $n$ and $m$ is a classic research topic, with many worst-case oriented results known. We present two algorithms for LCS length calculation…
Adaptations of features commonly applied in the field of visual computing, co-occurrence matrix (COM) and run-length matrix (RLM), are proposed for the similarity computation of strings in general (words, phrases, codes and texts). The…
This study investigates whether reoptimization can help in solving the closest substring problem. We are dealing with the following reoptimization scenario. Suppose, we have an optimal l-length closest substring of a given set of sequences…
Given a graph $G$, the Connected Vertex Cover problem (CVC) asks to find a minimum cardinality vertex cover of $G$ that induces a connected subgraph. In this paper we describe some approaches to solve the CVC problem exactly. First, we give…
A word is quasiperiodic (or coverable) if it can be covered with occurrences of another finite word, called its quasiperiod. A word is multi-scale quasiperiodic (or multi-scale coverable) if it has infinitely many different quasiperiods.…
A computably enumerable equivalence relation (ceer) $X$ is called self-full if whenever $f$ is a reduction of $X$ to $X$ then the range of $f$ intersects all $X$-equivalence classes. It is known that the infinite self-full ceers properly…
Given a pattern string $P$ of length $n$ and a query string $T$ of length $m$, where the characters of $P$ and $T$ are drawn from an alphabet of size $\Delta$, the {\em exact string matching} problem consists of finding all occurrences of…
The $k$-ExactCover problem is a parameterized version of the ExactCover problem, in which we are given a universe $U$, a collection $S$ of subsets of $U$, and an integer $k$, and the task is to determine whether $U$ can be partitioned into…
For a sequence $S$ of terms from an abelian group $G$ of length $|S|$, let $\Sigma_n(S)$ denote the set of all elements that can be represented as the sum of terms in some $n$-term subsequence of $S$. When the subsum set is very small,…
Traditional approaches focus on finding relationships between two entire time series, however, many interesting relationships exist in small sub-intervals of time and remain feeble during other sub-intervals. We define the notion of a…
In this paper, we consider the ``Shortest Superstring Problem''(SSP) or the ``Shortest Common Superstring Problem''(SCS). The problem is as follows. For a positive integer $n$, a sequence of n strings $S=(s^1,\dots,s^n)$ is given. We should…
Given \(k\) strings each of length at most $n$, computing the shortest common supersequence of them is a well-known NP-hard problem (when \(k\) is unbounded). On the other hand, when \(k=2\), such a shortest common supersequence can be…
Subgraph complementation is an operation that toggles all adjacencies inside a selected vertex set. Given a graph \(G\) and a target class \(\mathcal{C}\), the Minimum Subgraph Complementation problem asks for a minimum-size vertex set…
Several biological problems require the identification of regions in a sequence where some feature occurs within a target density range: examples including the location of GC-rich regions, identification of CpG islands, and sequence…
We introduce a new string matching problem called order-preserving matching on numeric strings where a pattern matches a text if the text contains a substring whose relative orders coincide with those of the pattern. Order-preserving…
We study computably enumerable equivalence relations (ceers) on N and unravel a rich structural theory for a strong notion of reducibility among ceers.