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Graph algorithms applied in many applications, including social networks, communication networks, VLSI design, graphics, and several others, require dynamic modifications -- addition and removal of vertices and/or edges -- in the graph.…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-01-16 Bapi Chatterjee , Sathya Peri , Muktikanta Sa , Nandini Singhal

One exact and two heuristic algorithms for determining the generators, orbits and order of the graph automorphism group are presented. A basic tool of these algorithms is the well-known individualization and refinement procedure. A search…

Data Structures and Algorithms · Computer Science 2016-07-27 Stoicho D. Stoichev

Node embeddings map graph vertices into low-dimensional Euclidean spaces while preserving structural information. They are central to tasks such as node classification, link prediction, and signal reconstruction. A key goal is to design…

Machine Learning · Computer Science 2026-02-18 Valentin de Bassompierre , Jean-Charles Delvenne , Laurent Jacques

Higher-order connectivity patterns such as small induced sub-graphs called graphlets (network motifs) are vital to understand the important components (modules/functional units) governing the configuration and behavior of complex networks.…

Social and Information Networks · Computer Science 2020-09-15 Aldo G. Carranza , Ryan A. Rossi , Anup Rao , Eunyee Koh

The widespread relevance of increasingly complex networks requires methods to extract meaningful coarse-grained representations of such systems. For undirected graphs, standard community detection methods use criteria largely based on…

Physics and Society · Physics 2010-12-14 Kathryn Cooper , Mauricio Barahona

Determining whether two graphs are structurally identical is a fundamental problem with applications spanning mathematics, computer science, chemistry, and network science. Despite decades of study, graph isomorphism remains a challenging…

Computational Physics · Physics 2026-04-10 Sara Najem , Amer E. Mouawad

We describe a simple algorithm based on a Markov chain process to generate simply connected acyclic directed graphs over a fixed set of vertices. This algorithm is an extension of a previous one, designed to generate acyclic digraphs, non…

Discrete Mathematics · Computer Science 2007-05-23 Guy Melancon , Fabrice Philippe

Directed acyclic graphs are a fundamental class of networks that includes citation networks, food webs, and family trees, among others. Here we define a random graph model for directed acyclic graphs and give solutions for a number of the…

Physics and Society · Physics 2009-03-23 Brian Karrer , M. E. J. Newman

Many scientific datasets are of high dimension, and the analysis usually requires visual manipulation by retaining the most important structures of data. Principal curve is a widely used approach for this purpose. However, many existing…

Artificial Intelligence · Computer Science 2016-01-19 Qi Mao , Li Wang , Ivor W. Tsang , Yijun Sun

The Havel-Hakimi algorithm for constructing realizations of degree sequences for undirected graphs has been used extensively in the literature. A result by Kleitman and Wang extends the Havel-Hakimi algorithm to degree sequences for…

Combinatorics · Mathematics 2015-03-13 M. Drew LaMar

The recent proliferation of publicly available graph-structured data has sparked an interest in machine learning algorithms for graph data. Since most traditional machine learning algorithms assume data to be tabular, embedding algorithms…

Machine Learning · Computer Science 2019-08-09 Sourav Mukherjee , Tim Oates , Ryan Wright

Attributed graph clustering is challenging as it requires joint modelling of graph structures and node attributes. Recent progress on graph convolutional networks has proved that graph convolution is effective in combining structural and…

Machine Learning · Computer Science 2019-06-05 Xiaotong Zhang , Han Liu , Qimai Li , Xiao-Ming Wu

Nowadays, blockchain is becoming a synonym for distributed ledger technology. However, blockchain is only one of the specializations in the field and is currently well-covered in existing literature, but mostly from a cryptographic point of…

Distributed, Parallel, and Cluster Computing · Computer Science 2018-04-27 Federico Matteo Benčić , Ivana Podnar Žarko

Classical graph matching aims to find a node correspondence between two unlabeled graphs of known topologies. This problem has a wide range of applications, from matching identities in social networks to identifying similar biological…

Signal Processing · Electrical Eng. & Systems 2024-10-28 Hang Liu , Anna Scaglione , Hoi-To Wai

Graph embedding is a transformation of nodes of a network into a set of vectors. A good embedding should capture the underlying graph topology and structure, node-to-node relationship, and other relevant information about the graph, its…

Social and Information Networks · Computer Science 2021-12-02 Bogumił Kamiński , Łukasz Kraiński , Paweł Prałat , François Théberge

In recent years, there have been intense research efforts to develop efficient methods for probabilistic inference in probabilistic influence diagrams or belief networks. Many people have concluded that the best methods are those based on…

Artificial Intelligence · Computer Science 2013-04-05 Ross D. Shachter , Stig K. Andersen , Kim-Leng Poh

Many real-world networks exhibit correlations between the node degrees. For instance, in social networks nodes tend to connect to nodes of similar degree. Conversely, in biological and technological networks, high-degree nodes tend to be…

Discrete Mathematics · Computer Science 2015-09-30 Kevin E. Bassler , Charo I. Del Genio , Péter L. Erdős , István Miklós , Zoltán Toroczkai

Bidirected graphs are a common generalisation of directed graphs where arcs can also be incoming to both their incident nodes, or outgoing from both their incident nodes. Such arcs allow a walk to change direction. Some algorithms can…

Data Structures and Algorithms · Computer Science 2026-05-14 Sebastian Schmidt , Juha Harviainen , Corentin Moumard , Aleksandr Politov , Francisco Sena , Alexandru I. Tomescu

Graph is a natural representation of data for a variety of real-word applications, such as knowledge graph mining, social network analysis and biological network comparison. For these applications, graph embedding is crucial as it provides…

Machine Learning · Computer Science 2020-01-24 Bitan Hou , Yujing Wang , Ming Zeng , Shan Jiang , Ole J. Mengshoel , Yunhai Tong , Jing Bai

Many complex networks display a mesoscopic structure with groups of nodes sharing many links with the other nodes in their group and comparatively few with nodes of different groups. This feature is known as community structure and encodes…

Physics and Society · Physics 2009-07-31 Andrea Lancichinetti , Santo Fortunato