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Longest Run Subsequence is a problem introduced recently in the context of the scaffolding phase of genome assembly (Schrinner et al., WABI 2020). The problem asks for a maximum length subsequence of a given string that contains at most one…

Data Structures and Algorithms · Computer Science 2021-06-23 Riccardo Dondi , Florian Sikora

We consider the general problem of the Longest Common Subsequence (LCS) on weighted sequences. Weighted sequences are an extension of classical strings, where in each position every letter of the alphabet may occur with some probability.…

Computational Complexity · Computer Science 2020-07-21 Evangelos Kipouridis , Kostas Tsichlas

We show that the number of all maximal $\alpha$-gapped repeats and palindromes of a word of length $n$ is at most $3(\pi^2/6 + 5/2) \alpha n$ and $7 (\pi^2 / 6 + 1/2) \alpha n - 5 n - 1$, respectively.

Formal Languages and Automata Theory · Computer Science 2018-03-01 Tomohiro I , Dominik Köppl

The Burrows-Wheeler Transform (BWT) is among the most influential discoveries in text compression and DNA storage. It is a reversible preprocessing step that rearranges an $n$-letter string into runs of identical characters (by exploiting…

Data Structures and Algorithms · Computer Science 2018-12-06 Sandip Sinha , Omri Weinstein

A word is called $\beta$-free if it has no factors of exponent greater than or equal to $\beta$. The repetition threshold $\mathrm{RT}(k)$ is the infimum of the set of all $\beta$ such that there are arbitrarily long $k$-ary $\beta$-free…

Combinatorics · Mathematics 2018-10-05 James D. Currie , Lucas Mol , Narad Rampersad

Motivated by arXiv:1203.5553, we continue to match super string amplitudes with their own effective field theory. We carry out within full details the computations of the complete form of the amplitude of one closed string Ramond-Ramond…

High Energy Physics - Theory · Physics 2013-04-16 Ehsan Hatefi

One expects type II string theory to be the unique ultraviolet completion of maximal supergravity. Motivated by the recent computation of the unitary bound on the leading Wilson coefficient within the S-matrix bootstrap, we analyse the…

High Energy Physics - Theory · Physics 2025-04-28 Guillaume Bossard , Adrien Loty

Recall that a Stirling permutation is a permutation on the multiset $\{1,1,2,2,\ldots,n,n\}$ such that any numbers appearing between repeated values of $i$ must be greater than $i$. We call a Stirling permutation ``flattened'' if the…

Combinatorics · Mathematics 2023-11-29 Adam Buck , Jennifer Elder , Azia A. Figueroa , Pamela E. Harris , Kimberly Harry , Anthony Simpson

The focus of this thesis is the study and construction of covering arrays, relying on maximal period sequences and other tools from finite fields. A covering array of strength $t$, denoted $\mathrm{CA}(N; t, k,v)$, is an $N\times k$ array…

Combinatorics · Mathematics 2017-08-29 Georgios Tzanakis

Re-Pair is an efficient grammar compressor that operates by recursively replacing high-frequency character pairs with new grammar symbols. The most space-efficient linear-time algorithm computing Re-Pair uses $(1+\epsilon)n+\sqrt n$ words…

Data Structures and Algorithms · Computer Science 2017-04-28 Philip Bille , Inge Li Gørtz , Nicola Prezza

We review old and recent results on a special limit of string theory on AdS$_3\times M_7$ with pure NS-NS fluxes: the limit in which the string length $\ell_s=\sqrt{\alpha'}$ equals the AdS$_3$ radius $R $. At this point of the moduli…

High Energy Physics - Theory · Physics 2020-06-24 Gaston Giribet

Reduced parameters [BKW, JCTB '26; BKRT, SODA '22] are defined via contraction sequences. Based on this framework, we introduce the reduced component max-leaf, denoted by $\operatorname{cml}^\downarrow$, where component max-leaf is the…

Data Structures and Algorithms · Computer Science 2026-04-22 Édouard Bonnet , Yeonsu Chang , Julien Duron , Colin Geniet , O-joung Kwon

Recently, it was shown that any theory of strings containing the string-replace function (even the most restricted version where pattern/replacement strings are both constant strings) becomes undecidable if we do not impose some kind of…

Logic in Computer Science · Computer Science 2017-11-10 Taolue Chen , Yan Chen , Matthew Hague , Anthony W. Lin , Zhilin Wu

We consider Penrose limits of the Klebanov-Strassler and Maldacena-Nunez holographic duals to N =1 supersymmetric Yang-Mills. By focusing in on the IR region we obtain exactly solvable string theory models. These represent the…

High Energy Physics - Theory · Physics 2009-11-07 Eric G. Gimon , Leopoldo A. Pando Zayas , Jacob Sonnenschein , Matthew J. Strassler

We present the results of a high statistics analysis of smeared Wilson loops in 4 dimensional SU(N) Yang-Mills theory for various values of N. The data is used to analyze the behaviour of smeared Creutz ratios, extracting from them the…

High Energy Physics - Theory · Physics 2013-01-04 Antonio González-Arroyo , Masanori Okawa

Two words have a reverse if they have the same pair of distinct letters on the same pair of positions, but in reversed order. A set of words no two of which have a reverse is said to be reverse-free. Let F(n,k) be the maximum size of a…

Combinatorics · Mathematics 2013-11-12 Josef Cibulka

We extend our previous work arXiv:1012.5721 [hep-th] on the non-compact N=2 SCFT_2 defined as the supersymmetric SL(2,R)/U(1)-gauged WZW model. Starting from path-integral calculations of torus partition functions of both the axial-type…

High Energy Physics - Theory · Physics 2015-05-30 Yuji Sugawara

Based on the Breslauer-Italiano online suffix tree construction algorithm (2013) with double logarithmic worst-case guarantees on the update time per letter, we develop near-real-time algorithms for several classical problems on strings,…

Data Structures and Algorithms · Computer Science 2026-02-18 Dominik Köppl , Gregory Kucherov

A binary extended 1-perfect code $\mathcal C$ folds over its kernel via the Steiner quadruple systems associated with its codewords. The resulting folding, proposed as a graph invariant for $\mathcal C$, distinguishes among the 361…

Combinatorics · Mathematics 2010-02-16 Italo J. Dejter

We consider the problem of storing a dynamic string $S$ over an alphabet $\Sigma=\{\,1,\ldots,\sigma\,\}$ in compressed form. Our representation supports insertions and deletions of symbols and answers three fundamental queries:…

Data Structures and Algorithms · Computer Science 2015-07-27 J. Ian Munro , Yakov Nekrich