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Recent years have witnessed a surge of biological interest in the minimum spanning tree (MST) problem for its relevance to automatic model construction using the distances between data points. Despite the increasing use of MST algorithms…

Quantitative Methods · Quantitative Biology 2015-11-02 Momoko Hayamizu , Hiroshi Endo , Kenji Fukumizu

We present a self-stabilizing protocol for an overlay network that constructs the Minimum Spanning Tree (MST) for an underlay that is modeled by a weighted tree. The weight of an overlay edge between two nodes is the weighted length of…

Distributed, Parallel, and Cluster Computing · Computer Science 2018-09-10 Thorsten Götte , Christian Scheideler , Alexander Setzer

A stable or locally-optimal cut of a graph is a cut whose weight cannot be increased by changing the side of a single vertex. In this paper we study Minimum Stable Cut, the problem of finding a stable cut of minimum weight. Since this…

Computational Complexity · Computer Science 2026-04-08 Michael Lampis

We use exponential start time clustering to design faster and more work-efficient parallel graph algorithms involving distances. Previous algorithms usually rely on graph decomposition routines with strict restrictions on the diameters of…

Data Structures and Algorithms · Computer Science 2015-06-25 Gary L. Miller , Richard Peng , Adrian Vladu , Shen Chen Xu

On an evolving graph that is continuously updated by a high-velocity stream of edges, how can one efficiently maintain if two vertices are connected? This is the connectivity problem, a fundamental and widely studied problem on graphs. We…

Data Structures and Algorithms · Computer Science 2016-02-18 Natcha Simsiri , Kanat Tangwongsan , Srikanta Tirthapura , Kun-Lung Wu

Stochastic optimization algorithms update models with cheap per-iteration costs sequentially, which makes them amenable for large-scale data analysis. Such algorithms have been widely studied for structured sparse models where the sparsity…

Machine Learning · Computer Science 2019-05-10 Baojian Zhou , Feng Chen , Yiming Ying

Given a graph $G = (V, E)$, we wish to compute a spanning tree whose maximum vertex degree, i.e. tree degree, is as small as possible. Computing the exact optimal solution is known to be NP-hard, since it generalizes the Hamiltonian path…

Data Structures and Algorithms · Computer Science 2020-06-02 Ran Duan , Haoqing He , Tianyi Zhang

We present a practically efficient algorithm for maintaining a global minimum cut in large dynamic graphs under both edge insertions and deletions. While there has been theoretical work on this problem, our algorithm is the first…

Data Structures and Algorithms · Computer Science 2021-01-14 Monika Henzinger , Alexander Noe , Christian Schulz

We study the generalized minimum Manhattan network (GMMN) problem: given a set $P$ of pairs of two points in the Euclidean plane $\mathbb{R}^2$, we are required to find a minimum-length geometric network which consists of axis-aligned…

Data Structures and Algorithms · Computer Science 2020-04-28 Yuya Masumura , Taihei Oki , Yutaro Yamaguchi

This paper presents an adaptive amoeba algorithm to address the shortest path tree (SPT) problem in dynamic graphs. In dynamic graphs, the edge weight updates consists of three categories: edge weight increases, edge weight decreases, the…

Neural and Evolutionary Computing · Computer Science 2013-11-05 Xiaoge Zhang , Qi Liu , Yong Hu , Felix T. S. Chan , Sankaran Mahadevan , Zili Zhang , Yong Deng

We study the problem of low-stretch spanning trees in graphs of bounded width: bandwidth, cutwidth, and treewidth. We show that any simple connected graph $G$ with a linear arrangement of bandwidth $b$ can be embedded into a distribution…

Data Structures and Algorithms · Computer Science 2020-04-20 Glencora Borradaile , Erin Wolf Chambers , David Eppstein , William Maxwell , Amir Nayyeri

We investigate the computation of minimum-cost spanning trees satisfying prescribed vertex degree constraints: Given a graph $G$ and a constraint function $D$, we ask for a (minimum-cost) spanning tree $T$ such that for each vertex $v$, $T$…

Data Structures and Algorithms · Computer Science 2026-05-05 Narek Bojikian , Alexander Firbas , Robert Ganian , Hung P. Hoang , Krisztina Szilágyi

Classically, planning tasks are studied as a two-step process: plan creation and plan execution. In situations where plan creation is slow (for example, due to expensive information access or complex constraints), a natural speed-up tactic…

Data Structures and Algorithms · Computer Science 2025-02-17 Katrin Casel , Stefan Neubert

In this paper, we study the problem of finding a minimum weight spanning tree that contains each vertex in a given subset $V_{\rm NT}$ of vertices as an internal vertex. This problem, called Minimum Weight Non-Terminal Spanning Tree,…

Data Structures and Algorithms · Computer Science 2025-01-30 Tesshu Hanaka , Yasuaki Kobayashi

The problem considered is the following. Given a graph with edge weights satisfying the triangle inequality, and a degree bound for each vertex, compute a low-weight spanning tree such that the degree of each vertex is at most its specified…

Data Structures and Algorithms · Computer Science 2015-06-02 S. Fekete , S. Khuller , M. Klemmstein , B. Raghavachari , Neal E. Young

We give an algorithm for finding the arboricity of a weighted, undirected graph, defined as the minimum number of spanning forests that cover all edges of the graph, in $\sqrt{n} m^{1+o(1)}$ time. This improves on the previous best bound of…

Data Structures and Algorithms · Computer Science 2025-07-22 Ruoxu Cen , Henry Fleischmann , George Z. Li , Jason Li , Debmalya Panigrahi

The Steiner tree problem aims to determine a minimum edge-weighted tree that spans a given set of terminal vertices from a given graph. In the past decade, a considerable number of algorithms have been developed to solve this…

Data Structures and Algorithms · Computer Science 2024-08-23 Ming Sun , Xinyu Wu , Yi Zhou , Jin-Kao Hao , Zhang-Hua Fu

Processing high-volume, streaming data is increasingly common in modern statistics and machine learning, where batch-mode algorithms are often impractical because they require repeated passes over the full dataset. This has motivated…

Formulations of graph algorithms using sparse linear algebra have yielded highly scalable distributed algorithms for problems such as connectivity and shortest path computation. We develop the first formulation of the Awerbuch-Shiloach…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-12-16 Tim Baer , Raghavendra Kanakagiri , Edgar Solomonik

We developed a flexible parallel algorithm for graph summarization based on vertex-centric programming and parameterized message passing. The base algorithm supports infinitely many structural graph summary models defined in a formal…

Data Structures and Algorithms · Computer Science 2022-11-07 Till Blume , Jannik Rau , David Richerby , Ansgar Scherp