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Discovery gene-disease links is important in biology and medicine areas, enabling disease identification and drug repurposing. Machine learning approaches accelerate this process by leveraging biological knowledge represented in ontologies…

Machine Learning · Computer Science 2025-04-14 Catarina Canastra , Cátia Pesquita

We define a graph-based rate optimization problem and consider its computation, which provides a unified approach to the computation of various theoretical limits, including the (conditional) graph entropy, rate-distortion functions and…

Information Theory · Computer Science 2025-03-18 Deheng Yuan , Tao Guo , Zhongyi Huang , Shi Jin

Large scale graph optimization problems arise in many fields. This paper presents an extensible, high performance framework (named OpenGraphGym-MG) that uses deep reinforcement learning and graph embedding to solve large graph optimization…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-06-25 Weijian Zheng , Dali Wang , Fengguang Song

Efficiently identifying keyphrases that represent a given document is a challenging task. In the last years, plethora of keyword detection approaches were proposed. These approaches can be based on statistical (frequency-based) properties…

Information Retrieval · Computer Science 2023-12-25 Blaž Škrlj , Boshko Koloski , Senja Pollak

Large language models (LLMs) are transforming the way information is retrieved with vast amounts of knowledge being summarized and presented via natural language conversations. Yet, LLMs are prone to highlight the most frequently seen…

Computation and Language · Computer Science 2024-02-20 Julien Delile , Srayanta Mukherjee , Anton Van Pamel , Leonid Zhukov

The evaluation of Datalog rules over large Knowledge Graphs (KGs) is essential for many applications. In this paper, we present a new method of materializing Datalog inferences, which combines a column-based memory layout with novel…

Databases · Computer Science 2016-02-12 Jacopo Urbani , Ceriel Jacobs , Markus Krötzsch

We study the problem of finding and monitoring fixed-size subgraphs in a continually changing large-scale graph. We present the first approach that (i) performs worst-case optimal computation and communication, (ii) maintains a total memory…

Distributed, Parallel, and Cluster Computing · Computer Science 2018-02-13 Khaled Ammar , Frank McSherry , Semih Salihoglu , Manas Joglekar

Graph neural networks (GNNs) are powerful deep learning models for graph-structured data, demonstrating remarkable success across diverse domains. Recently, the database (DB) community has increasingly recognized the potentiality of GNNs,…

Databases · Computer Science 2025-02-20 Ziming Li , Youhuan Li , Yuyu Luo , Guoliang Li , Chuxu Zhang

Graph pattern mining is important for analyzing graph data. Graph mining systems typically require answering pattern matching queries, which involve solving the NP-complete subgraph isomorphism problem. To address this, domain experts often…

Programming Languages · Computer Science 2026-05-27 Nazanin Yousefian , Kasra Jamshidi , Keval Vora , Anders Miltner

Here we study the semantic search and retrieval problem in biomedical digital libraries. First, we introduce MedGraph, a knowledge graph embedding-based method that provides semantic relevance retrieval and ranking for the biomedical…

Information Retrieval · Computer Science 2021-12-15 Islam Akef Ebeid , Elizabeth Pierce

We introduce in this paper a new summarization method for large graphs. Our summarization approach retains only a user-specified proportion of the neighbors of each node in the graph. Our main aim is to simplify large graphs so that they…

Data Structures and Algorithms · Computer Science 2021-01-28 Abd Errahmane Kiouche , Julien Baste , Mohammed Haddad , Hamida Seba

The past decades have witnessed the prosperity of graph mining, with a multitude of sophisticated models and algorithms designed for various mining tasks, such as ranking, classification, clustering and anomaly detection. Generally…

Machine Learning · Computer Science 2021-10-27 Zhe Xu , Boxin Du , Hanghang Tong

Graph Neural Networks (GNNs) have been predominant for graph learning tasks; however, recent studies showed that a well-known graph algorithm, Label Propagation (LP), combined with a shallow neural network can achieve comparable performance…

Machine Learning · Computer Science 2022-12-01 Zhiqiang Zhong , Sergey Ivanov , Jun Pang

Knowledge Graphs are increasingly becoming popular for a variety of downstream tasks like Question Answering and Information Retrieval. However, the Knowledge Graphs are often incomplete, thus leading to poor performance. As a result, there…

Computation and Language · Computer Science 2020-07-27 Siddhant Arora

Knowledge Graphs have been widely used to represent facts in a structured format. Due to their large scale applications, knowledge graphs suffer from being incomplete. The relation prediction task obtains knowledge graph completion by…

Computation and Language · Computer Science 2024-05-07 Sakher Khalil Alqaaidi , Krzysztof Kochut

Deep recommender systems rely heavily on large embedding tables to handle high-cardinality categorical features such as user/item identifiers, and face significant memory constraints at scale. To tackle this challenge, hashing techniques…

Information Retrieval · Computer Science 2025-02-11 Xinyi Wu , Donald Loveland , Runjin Chen , Yozen Liu , Xin Chen , Leonardo Neves , Ali Jadbabaie , Clark Mingxuan Ju , Neil Shah , Tong Zhao

Dense subgraph extraction is a fundamental problem in graph analysis and data mining, aimed at identifying cohesive and densely connected substructures within a given graph. It plays a crucial role in various domains, including social…

Data Structures and Algorithms · Computer Science 2024-03-01 Chia-Yang Hung , Chih-Ya Shen

A large number of applications such as querying sensor networks, and analyzing protein-protein interaction (PPI) networks, rely on mining uncertain graph and hypergraph databases. In this work we study the following problem: given an…

Data Structures and Algorithms · Computer Science 2018-01-11 Charalampos E. Tsourakakis , Shreyas Sekar , Johnson Lam , Liu Yang

Bio-Inspired Algorithms on Road Traffic Congestion and safety is a very promising research problem. Searching for an efficient optimization method to increase the degree of speed optimization and thereby increasing the traffic Flow in an…

Computers and Society · Computer Science 2012-12-13 Prasun Ghosal , Arijit Chakraborty , Sabyasachee Banerjee , Satabdi Barman

To solve the information explosion problem and enhance user experience in various online applications, recommender systems have been developed to model users preferences. Although numerous efforts have been made toward more personalized…

Information Retrieval · Computer Science 2020-03-03 Qingyu Guo , Fuzhen Zhuang , Chuan Qin , Hengshu Zhu , Xing Xie , Hui Xiong , Qing He
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