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Automatic Question Answering (QA) has been successfully applied in various domains such as search engines and chatbots. Biomedical QA (BQA), as an emerging QA task, enables innovative applications to effectively perceive, access and…

Computation and Language · Computer Science 2024-01-17 Qiao Jin , Zheng Yuan , Guangzhi Xiong , Qianlan Yu , Huaiyuan Ying , Chuanqi Tan , Mosha Chen , Songfang Huang , Xiaozhong Liu , Sheng Yu

The results of the seventh edition of the BioASQ challenge are presented in this paper. The aim of the BioASQ challenge is the promotion of systems and methodologies through the organization of a challenge on the tasks of large-scale…

Computation and Language · Computer Science 2020-06-17 Anastasios Nentidis , Konstantinos Bougiatiotis , Anastasia Krithara , Georgios Paliouras

The rapidly growth of biomedical literature creates challenges acquiring specific medical information. Current biomedical question-answering systems primarily focus on short-form answers, failing to provide comprehensive explanations…

Computation and Language · Computer Science 2026-01-05 Lovely Yeswanth Panchumarthi , Sumalatha Saleti , Sai Prasad Gudari , Atharva Negi , Praveen Raj Budime , Harsit Upadhya

This paper describes Macquarie University's contribution to the BioASQ Challenge (BioASQ 6b, Phase B). We focused on the extraction of the ideal answers, and the task was approached as an instance of query-based multi-document…

Computation and Language · Computer Science 2018-12-07 Diego Mollá

Question answering (QA) systems have gained explosive attention in recent years. However, QA tasks in Vietnamese do not have many datasets. Significantly, there is mostly no dataset in the medical domain. Therefore, we built a Vietnamese…

Computation and Language · Computer Science 2022-06-22 Nhung Thi-Hong Nguyen , Phuong Phan-Dieu Ha , Luan Thanh Nguyen , Kiet Van Nguyen , Ngan Luu-Thuy Nguyen

Biomedical question-answering (QA) systems require effective retrieval and generation components to ensure accuracy, efficiency, and scalability. This study systematically examines a Retrieval-Augmented Generation (RAG) system for…

Information Retrieval · Computer Science 2026-01-14 Linus Stuhlmann , Michael Alexander Saxer , Jonathan Fürst

We assessed the performance of commercial Large Language Models (LLMs) GPT-3.5-Turbo and GPT-4 on tasks from the 2023 BioASQ challenge. In Task 11b Phase B, which is focused on answer generation, both models demonstrated competitive…

Computation and Language · Computer Science 2023-07-25 Samy Ateia , Udo Kruschwitz

Motivated by the emerging demand in the financial industry for the automatic analysis of unstructured and structured data at scale, Question Answering (QA) systems can provide lucrative and competitive advantages to companies by…

Computation and Language · Computer Science 2025-05-05 Bithiah Yuan

Advancing the state-of-the-art in large-scale biomedical semantic indexing and question answering is the main focus of the BioASQ challenge. BioASQ organizes respective tasks where different teams develop systems that are evaluated on the…

In response to the Kaggle's COVID-19 Open Research Dataset (CORD-19) challenge, we have proposed three transformer-based question-answering systems using BERT, ALBERT, and T5 models. Since the CORD-19 dataset is unlabeled, we have evaluated…

Computation and Language · Computer Science 2021-01-28 Hillary Ngai , Yoona Park , John Chen , Mahboobeh Parsapoor

This thesis work falls within the framework of question answering (QA) in the biomedical domain where several specific challenges are addressed, such as specialized lexicons and terminologies, the types of treated questions, and the…

Computation and Language · Computer Science 2023-07-26 Mourad Sarrouti

Biomedical Question Answering aims to obtain an answer to the given question from the biomedical domain. Due to its high requirement of biomedical domain knowledge, it is difficult for the model to learn domain knowledge from limited…

Computation and Language · Computer Science 2022-06-29 Yuxuan Lu , Jingya Yan , Zhixuan Qi , Zhongzheng Ge , Yongping Du

The amount of publicly available biomedical literature has been growing rapidly in recent years, yet question answering systems still struggle to exploit the full potential of this source of data. In a preliminary processing step, many…

Information Retrieval · Computer Science 2018-01-10 Ferenc Galkó , Carsten Eickhoff

Prior work in standardized science exams requires support from large text corpus, such as targeted science corpus fromWikipedia or SimpleWikipedia. However, retrieving knowledge from the large corpus is time-consuming and questions embedded…

Artificial Intelligence · Computer Science 2020-04-28 Xinyue Zheng , Peng Wang , Qigang Wang , Zhongchao Shi

This is an overview of the twelfth edition of the BioASQ challenge in the context of the Conference and Labs of the Evaluation Forum (CLEF) 2024. BioASQ is a series of international challenges promoting advances in large-scale biomedical…

This is an overview of the eleventh edition of the BioASQ challenge in the context of the Conference and Labs of the Evaluation Forum (CLEF) 2023. BioASQ is a series of international challenges promoting advances in large-scale biomedical…

Macquarie University's contribution to the BioASQ challenge (Task 5b Phase B) focused on the use of query-based extractive summarisation techniques for the generation of the ideal answers. Four runs were submitted, with approaches ranging…

Computation and Language · Computer Science 2017-08-14 Diego Molla-Aliod

Supervised models trained to predict properties from representations have been achieving high accuracy on a variety of tasks. For instance, the BERT family seems to work exceptionally well on the downstream task from NER tagging to the…

Computation and Language · Computer Science 2020-12-22 Tejas Vaidhya , Ayush Kaushal

In this work we present Google's submission to the BioASQ 7 biomedical question answering (QA) task (specifically Task 7b, Phase B). The core of our systems are based on BERT QA models, specifically the model of \cite{alberti2019bert}. In…

Computation and Language · Computer Science 2019-09-25 Stefan Hosein , Daniel Andor , Ryan McDonald

This paper presents a zero-shot system for fact-checked claim retrieval. We employed several state-of-the-art large language models to obtain text embeddings. The models were then combined to obtain the best possible result. Our approach…

Computation and Language · Computer Science 2025-08-14 Ladislav Lenc , Daniel Cífka , Jiří Martínek , Jakub Šmíd , Pavel Král