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In phylogenetics, evolution is traditionally represented in a tree-like manner. However, phylogenetic networks can be more appropriate for representing evolutionary events such as hybridization, horizontal gene transfer, and others. In…
The classical matrix tree theorem relates the number of spanning trees of a connected graph with the product of the nonzero eigenvalues of its Laplacian matrix. The class of regular matroids generalizes that of graphical matroids, and a…
We consider drawings of graphs in the plane in which vertices are assigned distinct points in the plane and edges are drawn as simple curves connecting the vertices and such that the edges intersect only at their common endpoints. There is…
Given a function $f$ in a finite field ${\mathbb F}_q$ of $q$ elements, we define the functional graph of $f$ as a directed graph on $q$ nodes labelled by the elements of ${\mathbb F}_q$ where there is an edge from $u$ to $v$ if and only if…
A path partition (also referred to as a linear forest) of a graph $G$ is a set of vertex-disjoint paths which together contain all the vertices of $G$. An isolated vertex is considered to be a path in this case. The path partition…
We determine the probability thresholds for the existence of monotone paths, of finite and infinite length, in random oriented graphs with vertex set $\mathbb N^{[k]}$, the set of all increasing $k$-tuples in $\mathbb N$. These graphs…
We consider convex maps f:R^n -> R^n that are monotone (i.e., that preserve the product ordering of R^n), and nonexpansive for the sup-norm. This includes convex monotone maps that are additively homogeneous (i.e., that commute with the…
This contribution summarizes recent work of the authors that combines methods from dynamical systems theory (discrete Painlev\'e equations) and asymptotic analysis of orthogonal polynomial recurrences, to address long-standing questions in…
For a (possibly infinite) fixed family of graphs F, we say that a graph G overlays F on a hypergraph H if V(H) is equal to V(G) and the subgraph of G induced by every hyperedge of H contains some member of F as a spanning subgraph.While it…
We introduce a new matroid (graph) invariant, the arboricity polynomial. Given a matroid, the arboricity polynomial enumerates the number of covers of the ground set by disjoint independent sets. We establish the polynomiality of the…
We show that a nontrivial graph isomorphism problem of two undirected graphs, and more generally, the permutation similarity of two given $n\times n$ matrices, is equivalent to equalities of volumes of the induced three convex bounded…
Given a graph $G$, the longest path problem asks to compute a simple path of $G$ with the largest number of vertices. This problem is the most natural optimization version of the well known and well studied Hamiltonian path problem, and…
We present a class of linear programming approximations for constrained optimization problems. In the case of mixed-integer polynomial optimization problems, if the intersection graph of the constraints has bounded tree-width our…
We consider the approximability of the maximum edge-disjoint paths problem (MEDP) in undirected graphs, and in particular, the integrality gap of the natural multicommodity flow based relaxation for it. The integrality gap is known to be…
This is a survey on algorithmic questions about combinatorial and geometric properties of convex polytopes. We give a list of 35 problems; for each the current state of knowledege on its theoretical complexity status is reported. The…
Many well-known combinatorial optimization problems can be stated over the set of acyclic orientations of an undirected graph. For example, acyclic orientations with certain diameter constraints are closely related to the optimal solutions…
Symmetric edge polytopes, also called adjacency polytopes, are lattice polytopes determined by simple undirected graphs. We introduce the integer array \(\mathrm{maxf}(n,m)\) giving the maximum number of facets of a symmetric edge polytope…
We consider paths of steepest descent, in the complex plane, for the norm of a non-constant one variable polynomial $f$. We show that such paths, starting from a zero of the logarithmic derivative of $f$ and ending in a root of $f$, draw a…
We consider a class of fixed-charge transportation problems over graphs. We show that this problem is strongly NP-hard, but solvable in pseudo-polynomial time over trees using dynamic programming. We also show that the LP formulation…
In this paper, we consider the problem of counting and sampling structures in graphs. We define a class of "edge universal labeling problems"---which include proper $k$-colorings, independent sets, and downsets---and describe simple…