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Related papers: Torch-Struct: Deep Structured Prediction Library

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Probabilistic programming frameworks are powerful tools for statistical modelling and inference. They are not immediately generalisable to phylogenetic problems due to the particular computational properties of the phylogenetic tree object.…

Populations and Evolution · Quantitative Biology 2022-11-11 Christiaan Swanepoel , Mathieu Fourment , Xiang Ji , Hassan Nasif , Marc A Suchard , Frederick A Matsen , Alexei Drummond

NORD (Neural Operations Research & Development) is an open source distributed deep learning architectural research framework, based on PyTorch, MPI and Horovod. It aims to make research of deep architectures easier for experts of different…

Neural and Evolutionary Computing · Computer Science 2018-10-23 George Kyriakides , Konstantinos Margaritis

Deep research agents, which synthesize information across diverse sources, are significantly constrained by the sequential nature of reasoning. This bottleneck results in high latency, poor runtime adaptability, and inefficient resource…

Distributed, Parallel, and Cluster Computing · Computer Science 2026-03-31 Lunyiu Nie , Nedim Lipka , Ryan A. Rossi , Swarat Chaudhuri

The rnn package provides components for implementing a wide range of Recurrent Neural Networks. It is built withing the framework of the Torch distribution for use with the nn package. The components have evolved from 3 iterations, each…

Neural and Evolutionary Computing · Computer Science 2015-12-18 Nicholas Léonard , Sagar Waghmare , Yang Wang , Jin-Hwa Kim

Structured prediction models aim at solving a type of problem where the output is a complex structure, rather than a single variable. Performing knowledge distillation for such models is not trivial due to their exponentially large output…

Machine Learning · Computer Science 2022-03-10 Wenye Lin , Yangming Li , Lemao Liu , Shuming Shi , Hai-tao Zheng

We introduce PyTorch Geometric, a library for deep learning on irregularly structured input data such as graphs, point clouds and manifolds, built upon PyTorch. In addition to general graph data structures and processing methods, it…

Machine Learning · Computer Science 2019-04-26 Matthias Fey , Jan Eric Lenssen

Temporal networks have gained significant prominence in the past decade for modelling dynamic interactions within complex systems. A key challenge in this domain is Temporal Link Prediction (TLP), which aims to forecast future connections…

Artificial Intelligence · Computer Science 2025-03-03 Jiafeng Xiong , Ahmad Zareie , Rizos Sakellariou

We present PyTorch Frame, a PyTorch-based framework for deep learning over multi-modal tabular data. PyTorch Frame makes tabular deep learning easy by providing a PyTorch-based data structure to handle complex tabular data, introducing a…

Machine Learning · Computer Science 2024-12-17 Weihua Hu , Yiwen Yuan , Zecheng Zhang , Akihiro Nitta , Kaidi Cao , Vid Kocijan , Jinu Sunil , Jure Leskovec , Matthias Fey

We introduce structured prediction energy networks (SPENs), a flexible framework for structured prediction. A deep architecture is used to define an energy function of candidate labels, and then predictions are produced by using…

Machine Learning · Computer Science 2016-09-08 David Belanger , Andrew McCallum

Bayesian inference has predominantly relied on the Markov chain Monte Carlo (MCMC) algorithm for many years. However, MCMC is computationally laborious, especially for complex phylogenetic models of time trees. This bottleneck has led to…

Populations and Evolution · Quantitative Biology 2024-06-27 Mathieu Fourment , Matthew Macaulay , Christiaan J Swanepoel , Xiang Ji , Marc A Suchard , Frederick A Matsen

Performance analysis has always been an afterthought during the application development process, focusing on application correctness first. The learning curve of the existing static and dynamic analysis tools are steep, which requires…

Machine Learning · Computer Science 2021-04-23 Nathan Pinnow , Tarek Ramadan , Tanzima Z. Islam , Chase Phelps , Jayaraman J. Thiagarajan

Various natural language processing tasks are structured prediction problems where outputs are constructed with multiple interdependent decisions. Past work has shown that domain knowledge, framed as constraints over the output space, can…

Computation and Language · Computer Science 2020-06-03 Xingyuan Pan , Maitrey Mehta , Vivek Srikumar

We introduce Torch-Points3D, an open-source framework designed to facilitate the use of deep networks on3D data. Its modular design, efficient implementation, and user-friendly interfaces make it a relevant tool for research and…

Computer Vision and Pattern Recognition · Computer Science 2020-10-12 Thomas Chaton , Nicolas Chaulet , Sofiane Horache , Loic Landrieu

Obtaining syntactic parses is a crucial part of many NLP pipelines. However, most of the world's languages do not have large amounts of syntactically annotated corpora available for building parsers. Syntactic projection techniques attempt…

Computation and Language · Computer Science 2016-05-17 Ryan Georgi , Fei Xia , William D. Lewis

We present tntorch, a tensor learning framework that supports multiple decompositions (including Candecomp/Parafac, Tucker, and Tensor Train) under a unified interface. With our library, the user can learn and handle low-rank tensors with…

Machine Learning · Computer Science 2022-09-22 Mikhail Usvyatsov , Rafael Ballester-Ripoll , Konrad Schindler

Deep learning methods have boosted the adoption of NLP systems in real-life applications. However, they turn out to be vulnerable to distribution shifts over time which may cause severe dysfunctions in production systems, urging…

Computation and Language · Computer Science 2022-11-28 Pierre Colombo , Eduardo D. C. Gomes , Guillaume Staerman , Nathan Noiry , Pablo Piantanida

This paper presents the design, implementation, and evaluation of the PyTorch distributed data parallel module. PyTorch is a widely-adopted scientific computing package used in deep learning research and applications. Recent advances in…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-06-30 Shen Li , Yanli Zhao , Rohan Varma , Omkar Salpekar , Pieter Noordhuis , Teng Li , Adam Paszke , Jeff Smith , Brian Vaughan , Pritam Damania , Soumith Chintala

Tensor networks are factorizations of high-dimensional tensors into networks of smaller tensors. They have applications in physics and mathematics, and recently have been proposed as promising machine learning architectures. To ease the…

Machine Learning · Computer Science 2024-06-12 José Ramón Pareja Monturiol , David Pérez-García , Alejandro Pozas-Kerstjens

The influence of deep learning is continuously expanding across different domains, and its new applications are ubiquitous. The question of neural network design thus increases in importance, as traditional empirical approaches are reaching…

Neural and Evolutionary Computing · Computer Science 2021-01-29 Anton Muravev , Jenni Raitoharju , Moncef Gabbouj

A powerful and flexible approach to structured prediction consists in embedding the structured objects to be predicted into a feature space of possibly infinite dimension by means of output kernels, and then, solving a regression problem in…

Machine Learning · Statistics 2020-11-03 Luc Brogat-Motte , Alessandro Rudi , Céline Brouard , Juho Rousu , Florence d'Alché-Buc