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A class of preconditioners is introduced to enhance geometry optimisation and transition state search of molecular systems. We start from the Hessian of molecular mechanical terms, decompose it and retain only its positive definite part to…

Chemical Physics · Physics 2018-04-06 Letif Mones , Gabor Csanyi , Christoph Ortner

We present an auxiliary space theory that provides a unified framework for analyzing various iterative methods for solving linear systems that may be semidefinite. By interpreting a given iterative method for the original system as an…

Numerical Analysis · Mathematics 2025-09-10 Jongho Park , Jinchao Xu

Randomized methods are becoming increasingly popular in numerical linear algebra. However, few attempts have been made to use them in developing preconditioners. Our interest lies in solving large-scale sparse symmetric positive definite…

Numerical Analysis · Mathematics 2021-11-16 Hussam Al Daas , Tyrone Rees , Jennifer Scott

Several recent works have developed a new, probabilistic interpretation for numerical algorithms solving linear systems in which the solution is inferred in a Bayesian framework, either directly or by inferring the unknown action of the…

Computation · Statistics 2018-10-18 Simon Bartels , Jon Cockayne , Ilse C. F. Ipsen , Philipp Hennig

Using the framework of operator or Calder\'on preconditioning, uniform preconditioners are constructed for elliptic operators discretized with continuous finite (or boundary) elements. The preconditioners are constructed as the composition…

Numerical Analysis · Mathematics 2021-10-27 Rob Stevenson , Raymond van Venetië

The task of choosing a preconditioner $\boldsymbol{M}$ to use when solving a linear system $\boldsymbol{Ax}=\boldsymbol{b}$ with iterative methods is difficult. For instance, even if one has access to a collection…

Numerical Analysis · Mathematics 2024-09-23 Conner DiPaolo , Weiqing Gu

We present economical iterative algorithms built on the Biconjugate $A$-Orthonormalization Procedure for real unsymmetric and complex non-Hermitian systems. The principal characteristics of the developed solvers is that they are fast…

Numerical Analysis · Mathematics 2010-04-12 B. Carpentieri , Y. -F. Jing , T. -Z. Huang , Y. Duan

In this research, to solve the large indefinite least squares problem, we firstly transform its normal equation into a sparse block three-by-three linear systems, then use GMRES method with an accelerated preconditioner to solve it. The…

Numerical Analysis · Mathematics 2025-05-26 Jun Li , Lingsheng Meng

This paper considers the numerical solution of generalized Sylvester matrix equations, which arise in many scientific and engineering applications but remain challenging to solve efficiently, particularly when the coefficient matrices are…

Numerical Analysis · Mathematics 2026-04-20 Hongjia Chen , Chun-Hua Zhang , Zhongming Teng , Lei Du

When a matrix A with n columns is known to be well approximated by a linear combination of basis matrices B_1,..., B_p, we can apply A to a random vector and solve a linear system to recover this linear combination. The same technique can…

Numerical Analysis · Mathematics 2011-10-20 Jiawei Chiu , Laurent Demanet

Preconditioning of a linear system obtained from spectral discretization of time-dependent PDEs often results in a full matrix which is expensive to compute and store specially when the problem size increases. A matrix-free implementation…

Statistics Theory · Mathematics 2016-06-09 A. Ghasemi , L. K. Taylor

We describe a quantum algorithm that generalizes the quantum linear system algorithm [Harrow et al., Phys. Rev. Lett. 103, 150502 (2009)] to arbitrary problem specifications. We develop a state preparation routine that can initialize…

Quantum Physics · Physics 2013-06-25 B. D. Clader , B. C. Jacobs , C. R. Sprouse

Recent literature has advocated the use of randomized methods for accelerating the solution of various matrix problems arising throughout data science and computational science. One popular strategy for leveraging randomization is to use it…

Numerical Analysis · Mathematics 2024-09-27 Boris Shustin , Haim Avron

Least squares method is one of the simplest and most popular techniques applied in data fitting, imaging processing and high dimension data analysis. The classic methods like QR and SVD decomposition for solving least squares problems has a…

Numerical Analysis · Mathematics 2018-06-11 Long Chen , Huiwen Wu

Preconditioning is at the core of modern many-fermion Monte Carlo algorithms, such as Hybrid Monte Carlo, where the repeated solution of a linear problem involving an ill-conditioned matrix is needed. We report on a performance comparison…

High Energy Physics - Lattice · Physics 2010-08-24 Timour Ten , Joaquín E. Drut , Timo A. Lähde

We show that the mass matrix derived from finite elements can be effectively used as a preconditioner for iteratively solving the linear system arising from finite-difference discretization of the Poisson equation, using the conjugate…

Numerical Analysis · Mathematics 2021-11-08 Chen Greif , Yunhui He

We aim to solve the incompressible Navier-Stokes equations within the complex microstructure of a porous material. Discretizing the equations on a fine grid using a staggered (e.g., marker-and-cell, mixed FEM) scheme results in a nonlinear…

Numerical Analysis · Mathematics 2025-10-28 Kangan Li , Yashar Mehmani

We propose an augmented Lagrangian-based preconditioner to accelerate the convergence of Krylov subspace methods applied to linear systems of equations with a block three-by-three structure such as those arising from mixed finite element…

Numerical Analysis · Mathematics 2023-10-26 Fatemeh P. A. Beik , Michele Benzi

Given a full column rank matrix $A \in \mathbb{R}^{m\times n}$ ($m\geq n$), we consider a special class of linear systems of the form $A^\top Ax=A^\top b+c$ with $x, c \in \mathbb{R}^{n}$ and $b \in \mathbb{R}^{m}$. The occurrence of $c$ in…

Numerical Analysis · Mathematics 2019-11-04 Henri Calandra , Serge Gratton , Elisa Riccietti , Xavier Vasseur

A reduced-order model algorithm, based on approximations of Lax pairs, is proposed to solve nonlinear evolution partial differential equations. Contrary to other reduced-order methods, like Proper Orthogonal Decomposition, the space where…

Numerical Analysis · Mathematics 2012-11-20 Jean-Frédéric Gerbeau , Damiano Lombardi