Related papers: A combinatorial representation for the invariant m…
A permutation graph is a graph whose edges are given by inversions of a permutation. We study the Abelian sandpile model (ASM) on such graphs. We exhibit a bijection between recurrent configurations of the ASM on permutation graphs and the…
A metric phylogenetic tree relating a collection of taxa induces weighted rooted triples and weighted quartets for all subsets of three and four taxa, respectively. New intertaxon distances are defined that can be calculated from these…
We introduce a process where a connected rooted multigraph evolves by splitting events on its vertices, occurring randomly in continuous time. When a vertex splits, its incoming edges are randomly assigned between its offspring and a…
Various kinds of spread of influence occur in real world social and virtual networks. These phenomena are formulated by activation processes and irreversible dynamic monopolies in combinatorial graphs representing the topology of the…
Ultametrics are an important class of distances used in applications such as phylogenetics, clustering and classification theory. Ultrametrics are essentially distances that can be represented by an edge-weighted rooted tree so that all of…
We consider complete graphs with edge weights and/or node weights taking values in some set. In the first part of this paper, we show that a large number of graphs are completely determined, up to isomorphism, by the distribution of their…
A graphical model provides a compact and efficient representation of the association structure of a multivariate distribution by means of a graph. Relevant features of the distribution are represented by vertices, edges and other…
A covariance graph is an undirected graph associated with a multivariate probability distribution of a given random vector where each vertex represents each of the different components of the random vector and where the absence of an edge…
We study the problem of how well a tree metric is able to preserve the sum of pairwise distances of an arbitrary metric. This problem is closely related to low-stretch metric embeddings and is interesting by its own flavor from the line of…
We study the large-deviation properties of minimum spanning trees for two ensembles of random graphs with $N$ nodes. First, we consider complete graphs. Second, we study Erd\H{o}s-R\'{e}nyi (ER) random graphs with edge probability $p=c/N$…
There are several interrelated notions of discrete curvature on graphs. Many approaches utilize the optimal transportation metric on its probability simplex or the distance matrix of the graph. In this survey article, we compute formulas…
We introduce diffusion geometry as a new framework for geometric and topological data analysis. Diffusion geometry uses the Bakry-Emery $\Gamma$-calculus of Markov diffusion operators to define objects from Riemannian geometry on a wide…
We propose a new graph metric and study its properties. In contrast to the standard distance in connected graphs, it takes into account all paths between vertices. Formally, it is defined as d(i,j)=q_{ii}+q_{jj}-q_{ij}-q_{ji}, where q_{ij}…
In this paper we investigate the application of non-local graph entropy to evolving and dynamical graphs. The measure is based upon the notion of Markov diffusion on a graph, and relies on the entropy applied to trajectories originating at…
We develop exact Markov chain Monte Carlo methods for discretely-sampled, directly and indirectly observed diffusions. The qualification "exact" refers to the fact that the invariant and limiting distribution of the Markov chains is the…
In the paper we are dealing with metric measure spaces of diameter at most one and of total measure one. Gromov introduced the sampling compactification of the set of these spaces. He asked whether the metric measure space invariants extend…
The transition matrix of a Markov chain $(X_k,k\geq 0)$ on a finite or infinite rooted tree is said to be almost upper-directed if, given $X_k$, the node $X_{k+1}$ is either a descendant of $X_k$ or the parent of $X_k$. It is said to be…
Let $D$ be a connected weighted digraph. The relation between the vertex weighted complexity (with a fixed root) of the line digraph of $D$ and the edge weighted complexity (with a fixed root) of $D$ has been given in (L. Levine, Sandpile…
We generalize the uniform spanning tree to construct a family of determinantal measures on essential spanning forests on periodic planar graphs in which every component tree is bi-infinite. Like the uniform spanning tree, these measures…
Consider a probability measure on a Hilbert space defined via its density with respect to a Gaussian. The purpose of this paper is to demonstrate that an appropriately defined Markov chain, which is reversible with respect to the measure in…