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Structural identifiability and observability are desirable properties of systems biology models. Many software toolboxes have been developed for their analysis in the last decades. STRIKE-GOLDD is a generally applicable tool that can…

Systems and Control · Electrical Eng. & Systems 2022-07-18 Sandra Díaz-Seoane , Xabier Rey-Barreiro , Alejandro F. Villaverde

pyspeckit is a toolkit and library for spectroscopic analysis in Python. We describe the pyspeckit package and highlight some of its capabilities, such as interactively fitting a model to data, akin to the historically widely-used splot…

Instrumentation and Methods for Astrophysics · Physics 2022-06-01 Adam Ginsburg , Vlas Sokolov , Miguel de Val-Borro , Erik Rosolowsky , Jaime E. Pineda , Brigitta M. Sipőcz , Jonathan D. Henshaw

Reliable parameter extraction from experimental data is central to quantitative analysis in spectroscopy, diffraction, photoluminescence, chromatography, microscopy, and time-resolved measurements. We present FitED, a Python-based desktop…

Data Analysis, Statistics and Probability · Physics 2026-05-04 Mustafa Mahmoud Aboulsaad

As genomic scale datasets motivate research on species tree inference, simulators of the multispecies coalescent (MSC) process are essential for the testing and evaluation of new inference methods. However, the simulators themselves must be…

Populations and Evolution · Quantitative Biology 2019-08-06 Elizabeth S. Allman , Hector Baños , John A. Rhodes

Static analysis tools are frequently used to scan the source code and detect deviations from the project coding guidelines. Given their importance, linters are often introduced to classrooms to educate students on how to detect and…

Software Engineering · Computer Science 2023-07-20 Eman Abdullah AlOmar , Salma Abdullah AlOmar , Mohamed Wiem Mkaouer

This study has proposed an E-textbook platform, MetaCQ, which integrates ITS and OLM to enable users to monitor their study progress. The platform adopts a chatbot to generate MCQs and manage learners' study data and their learning model.…

Human-Computer Interaction · Computer Science 2025-12-02 Beier Wang , Xueting Huang

Accurate net load forecasting is vital for energy planning, aiding decisions on trade and load distribution. However, assessing the performance of forecasting models across diverse input variables, like temperature and humidity, remains…

Human-Computer Interaction · Computer Science 2024-03-11 Kaustav Bhattacharjee , Soumya Kundu , Indrasis Chakraborty , Aritra Dasgupta

Background: Software Process Simulation (SPS) has become an effective tool for software process management and improvement. However, its adoption in industry is less than what the research community expected due to the burden of measurement…

Software Engineering · Computer Science 2023-01-18 Bohan Liu , He Zhang , Liming Dong , Zhiqi Wang , Shanshan Li

Metadata play a crucial role in adopting the FAIR principles for research software and enables findability and reusability. However, creating high-quality metadata can be resource-intensive for researchers and research software engineers.…

Software Engineering · Computer Science 2025-12-17 Stephan Ferenz , Aida Jafarbigloo , Oliver Werth , Astrid Nieße

With the growing pervasiveness of artificial intelligence, the ability to explain the inferences made by machine learning models has become increasingly important. Numerous techniques for model explainability have been proposed, with…

Human-Computer Interaction · Computer Science 2026-04-08 Nicola Rossberg , Bennett Kleinberg , Barry O'Sullivan , Luca Longo , Andrea Visentin

As machine learning (ML) models are increasingly deployed in high-stakes domains, trustworthy uncertainty quantification (UQ) is critical for ensuring the safety and reliability of these models. Traditional UQ methods rely on specifying a…

Machine Learning · Statistics 2025-05-14 Abhineet Agarwal , Michael Xiao , Rebecca Barter , Omer Ronen , Boyu Fan , Bin Yu

Simultaneously monitoring changes in both the mean and variance is a fundamental problem in Statistical Process Control, and numerous methods have been developed to address it. However, many existing approaches face notable limitations:…

Methodology · Statistics 2025-09-03 Gokul Parakulum , Jun Li

Machine learning is more and more applied in critical application areas like health and driver assistance. To minimize the risk of wrong decisions, in such applications it is necessary to consider the certainty of a classification to reject…

Machine Learning · Computer Science 2024-06-26 Stephan Hasler , Lydia Fischer

Computing devices and associated software govern everyday life, and form the backbone of safety critical systems in banking, healthcare, automotive and other fields. Increasing system complexity, quickly evolving technologies and paradigm…

Software Engineering · Computer Science 2020-09-04 Arthur-Jozsef Molnar , Alexandra Neamţu , Simona Motogna

Live sequence charts (LSCs) have been proposed as an inter-object scenario-based specification and visual programming language for reactive systems. In this paper, we introduce a logic-based framework to check the consistency of an LSC…

Logic in Computer Science · Computer Science 2010-02-17 Hai-Feng Guo , Wen Zheng , Mahadevan Subramaniam

Systematic application of software metric techniques can lead to significant improvements of the quality of a final software product. However, there is still the evident lack of wider utilization of software metrics techniques and tools due…

Software Engineering · Computer Science 2013-11-18 Gordana Rakic , Zoran Budimac

Applications integrating analysis components require a programmable interface which defines statistical operations independently of any programming language. By separating concerns of scientific computing from application and implementation…

Computation · Statistics 2014-06-19 Jeroen Ooms

Traditional Statistical Process Control (SPC) is essential for quality management but is limited by its reliance on often violated statistical assumptions, leading to unreliable monitoring in modern, complex manufacturing environments. This…

Machine Learning · Computer Science 2025-12-30 Christopher Burger

Testability is the probability whether tests will detect a fault, given that a fault in the program exists. How efficiently the faults will be uncovered depends upon the testability of the software. Various researchers have proposed…

Software Engineering · Computer Science 2013-08-16 Sujata Khatri , R. S. Chhillar , V. B. Singh

Amidst the surge in the use of Artificial Intelligence (AI) for control purposes, classical and model-based control methods maintain their popularity due to their transparency and deterministic nature. However, advanced controllers like…

Systems and Control · Electrical Eng. & Systems 2025-10-28 Jean Pierre Allamaa , Panagiotis Patrinos , Tong Duy Son
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