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Predicting structural and energetic properties of a molecular system is one of the fundamental tasks in molecular simulations, and it has use cases in chemistry, biology, and medicine. In the past decade, the advent of machine learning…

Chemical Physics · Physics 2022-08-23 Sajjad Heydari , Stefano Raniolo , Lorenzo Livi , Vittorio Limongelli

Lifelong learning and adaptability are two defining aspects of biological agents. Modern reinforcement learning (RL) approaches have shown significant progress in solving complex tasks, however once training is concluded, the found…

Neural and Evolutionary Computing · Computer Science 2022-04-20 Elias Najarro , Sebastian Risi

Memory is a key component of biological neural systems that enables the retention of information over a huge range of temporal scales, ranging from hundreds of milliseconds up to years. While Hebbian plasticity is believed to play a pivotal…

Neural and Evolutionary Computing · Computer Science 2022-05-24 Thomas Limbacher , Ozan Özdenizci , Robert Legenstein

Cell biomechanics involve a great number of complex phenomena that are fundamental to the evolution of life itself and other associated processes, ranging from the very early stages of embryo-genesis to the maintenance of damaged structures…

Computer Vision and Pattern Recognition · Computer Science 2025-09-09 Juan Olalla-Pombo , Alberto Badías , Miguel Ángel Sanz-Gómez , José María Benítez , Francisco Javier Montáns

Deep neural networks drive the success of natural language processing. A fundamental property of language is its compositional structure, allowing humans to systematically produce forms for new meanings. For humans, languages with more…

Computation and Language · Computer Science 2025-01-10 Lukas Galke , Yoav Ram , Limor Raviv

Continuous, adaptive learning, the ability to adapt to the environment and keep improving performance, is a hallmark of natural intelligence. Biological organisms excel in acquiring, transferring, and retaining knowledge while adapting to…

Neurons and Cognition · Quantitative Biology 2026-03-03 Jie Mei , Alejandro Rodriguez-Garcia , Daigo Takeuchi , Gabriel Wainstein , Nina Hubig , Yalda Mohsenzadeh , Srikanth Ramaswamy

Artificial Neural Networks, the building blocks of AI, were inspired by the human brain's network of neurons. Over the years, these networks have evolved to replicate the complex capabilities of the brain, allowing them to handle tasks such…

Neurons and Cognition · Quantitative Biology 2025-11-11 Sanaz Saki Norouzi , Mohammad Masjedi , Pascal Hitzler

Reverberating dynamics of neural network is modelled on PC in order to illustrate possible role of inhibition as binding controller in the network. The network is composed of binding neurons. In the binding neuron model the degree of…

Neurons and Cognition · Quantitative Biology 2013-05-17 Alexander Vidybida

Recurrent networks of spiking neurons (RSNNs) underlie the astounding computing and learning capabilities of the brain. But computing and learning capabilities of RSNN models have remained poor, at least in comparison with artificial neural…

Neural and Evolutionary Computing · Computer Science 2018-12-27 Guillaume Bellec , Darjan Salaj , Anand Subramoney , Robert Legenstein , Wolfgang Maass

Error backpropagation is a highly effective mechanism for learning high-quality hierarchical features in deep networks. Updating the features or weights in one layer, however, requires waiting for the propagation of error signals from…

Neural and Evolutionary Computing · Computer Science 2017-11-21 Hesham Mostafa , Vishwajith Ramesh , Gert Cauwenberghs

We present an account of neuroplasticity with respect to cell-internal processing pathways in relation to membrane and synaptic plasticity. We think traditional synapse-centric, weight-based models of memorization are not sufficient or…

Neurons and Cognition · Quantitative Biology 2026-04-27 Gabriele Scheler

Learning in the brain is poorly understood and learning rules that respect biological constraints, yet yield deep hierarchical representations, are still unknown. Here, we propose a learning rule that takes inspiration from neuroscience and…

Neural and Evolutionary Computing · Computer Science 2021-10-27 Bernd Illing , Jean Ventura , Guillaume Bellec , Wulfram Gerstner

Recent years have seen tremendous developments in the use of machine learning models to link amino acid sequence, structure and function of folded proteins. These methods are, however, rarely applicable to the wide range of proteins and…

Biomolecules · Quantitative Biology 2025-02-27 Sören von Bülow , Giulio Tesei , Kresten Lindorff-Larsen

A feed-forward neural net with adaptable synaptic weights and fixed, zero or non-zero threshold potentials is studied, in the presence of a global feedback signal that can only have two values, depending on whether the output of the network…

Disordered Systems and Neural Networks · Physics 2009-11-10 J. Bedaux , W. A. van Leeuwen

Physical neural networks are artificial neural networks that mimic synapses and neurons using physical systems or materials. These networks harness the distinctive characteristics of physical systems to carry out computations effectively,…

Applied Physics · Physics 2024-08-13 Weichao Yu , Hangwen Guo , Jiang Xiao , Jian Shen

The learned weights of a neural network are often considered devoid of scrutable internal structure. To discern structure in these weights, we introduce a measurable notion of modularity for multi-layer perceptrons (MLPs), and investigate…

Neural and Evolutionary Computing · Computer Science 2022-02-09 Daniel Filan , Shlomi Hod , Cody Wild , Andrew Critch , Stuart Russell

Deep neural-network-based language models (LMs) are increasingly applied to large-scale protein sequence data to predict protein function. However, being largely black-box models and thus challenging to interpret, current protein LM…

Quantitative Methods · Quantitative Biology 2024-08-06 Mai Ha Vu , Rahmad Akbar , Philippe A. Robert , Bartlomiej Swiatczak , Victor Greiff , Geir Kjetil Sandve , Dag Trygve Truslew Haug

We propose a fully autonomous, thermodynamically consistent set of chemical reactions that implements a spiking neuron. This chemical neuron is able to learn input patterns in a Hebbian fashion. The system is scalable to arbitrarily many…

Neural and Evolutionary Computing · Computer Science 2020-09-29 Jakub Fil , Dominique Chu

A model of the columnar functional organization of neocortical association areas is studied. The neuronal network is composed of many Hebbian autoassociators, or modules, each of which interacts with a relatively small number of the others.…

Disordered Systems and Neural Networks · Physics 2020-05-14 Carlo Fulvi Mari

Hopfield neural networks are a possible basis for modelling associative memory in living organisms. After summarising previous studies in the field, we take a new look at learning rules, exhibiting them as descent-type algorithms for…

Neural and Evolutionary Computing · Computer Science 2020-10-06 Pavel Tolmachev , Jonathan H. Manton