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Deep convolutional neural networks (CNNs) have demonstrated impressive performance on visual object classification tasks. In addition, it is a useful model for predication of neuronal responses recorded in visual system. However, there is…

Machine Learning · Statistics 2017-11-15 Qi Yan , Zhaofei Yu , Feng Chen , Jian K. Liu

Multiple Kernel Learning is a conventional way to learn the kernel function in kernel-based methods. MKL algorithms enhance the performance of kernel methods. However, these methods have a lower complexity compared to deep learning models…

Machine Learning · Computer Science 2023-05-05 Ahmad Navid Ghanizadeh , Kamaledin Ghiasi-Shirazi , Reza Monsefi , Mohammadreza Qaraei

Deep Learning (DL) algorithms hold great promise for applications in the field of computational biophysics. In fact, the vast amount of available molecular structures, as well as their notable complexity, constitutes an ideal context in…

Soft Condensed Matter · Physics 2019-01-07 Marco Giulini , Raffaello Potestio

In this brief paper, a learning algorithm is developed for Deep Learning Neuro-Skin Neural Network to improve their learning properties. Neuroskin is a new type of neural network presented recently by the authors. It is comprised of a…

Neural and Evolutionary Computing · Computer Science 2020-07-10 Mehrdad Shafiei Dizaji

A dynamical neural network consists of a set of interconnected neurons that interact over time continuously. It can exhibit computational properties in the sense that the dynamical system's evolution and/or limit points in the associated…

Machine Learning · Computer Science 2018-05-24 Tsung-Han Lin , Ping Tak Peter Tang

Neural networks can be used to identify phases and phase transitions in condensed matter systems via supervised machine learning. Readily programmable through modern software libraries, we show that a standard feed-forward neural network…

Strongly Correlated Electrons · Physics 2017-05-24 Juan Carrasquilla , Roger G. Melko

Theoretical models of neuronal function consider different mechanisms through which networks learn, classify and discern inputs. A central focus of these models is to understand how associations are established amongst neurons, in order to…

Neurons and Cognition · Quantitative Biology 2015-05-19 Harold P. de Vladar , Eörs Szathmáry

We study the improper learning of multi-layer neural networks. Suppose that the neural network to be learned has $k$ hidden layers and that the $\ell_1$-norm of the incoming weights of any neuron is bounded by $L$. We present a kernel-based…

Machine Learning · Computer Science 2015-10-14 Yuchen Zhang , Jason D. Lee , Michael I. Jordan

Convolutional neural networks have been successfully applied to various NLP tasks. However, it is not obvious whether they model different linguistic patterns such as negation, intensification, and clause compositionality to help the…

Computation and Language · Computer Science 2018-10-23 Mahnaz Koupaee , William Yang Wang

We introduce and study a new model of interacting neural networks, incorporating the spatial dimension (e.g. position of neurons across the cortex) and some learning processes. The dynamic of each neural network is described via the elapsed…

Analysis of PDEs · Mathematics 2020-09-03 Delphine Salort , Nicolas Torres

Deep learning techniques have recently demonstrated broad success in predicting complex dynamical systems ranging from turbulence to human speech, motivating broader questions about how neural networks encode and represent dynamical rules.…

Cellular Automata and Lattice Gases · Physics 2020-01-20 William Gilpin

This paper proposes a new paradigm for learning a set of independent logical rules in disjunctive normal form as an interpretable model for classification. We consider the problem of learning an interpretable decision rule set as training a…

Machine Learning · Computer Science 2021-03-15 Litao Qiao , Weijia Wang , Bill Lin

The aim of the present paper is to study the effects of Hebbian learning in random recurrent neural networks with biological connectivity, i.e. sparse connections and separate populations of excitatory and inhibitory neurons. We furthermore…

Neurons and Cognition · Quantitative Biology 2007-06-19 Benoit Siri , Mathias Quoy , Bruno Delord , Bruno Cessac , Hugues Berry

In both neuroscience and artificial intelligence, popular functional frameworks and neural network formulations operate by making use of extrinsic error measurements and global learning algorithms. Through a set of conjectures based on…

Neurons and Cognition · Quantitative Biology 2026-02-18 Linus Mårtensson , Jonas M. D. Enander , Udaya B. Rongala , Henrik Jörntell

Artificial intelligence (AI) is reshaping computational and network biology by enabling new approaches to decode cellular communication networks. We introduce Hierarchical Molecular Language Models (HMLMs), a novel framework that models…

Molecular Networks · Quantitative Biology 2025-12-16 Hasi Hays , Yue Yu , William J. Richardson

Associative learning is one of the key mechanisms displayed by living organisms in order to adapt to their changing environments. It was early recognized to be a general trait of complex multicellular organisms but also found in "simpler"…

Cell Behavior · Quantitative Biology 2017-01-24 Javier Macia , Blai Vidiella , Ricard Sole

Statistical properties of environments experienced by biological signaling systems in the real world change, which necessitate adaptive responses to achieve high fidelity information transmission. One form of such adaptive response is gain…

Molecular Networks · Quantitative Biology 2012-05-01 Ilya Nemenman

We show that a message-passing process allows to store in binary "material" synapses a number of random patterns which almost saturates the information theoretic bounds. We apply the learning algorithm to networks characterized by a wide…

Disordered Systems and Neural Networks · Physics 2009-11-11 Alfredo Braunstein , Riccardo Zecchina

An established normative approach for understanding the algorithmic basis of neural computation is to derive online algorithms from principled computational objectives and evaluate their compatibility with anatomical and physiological…

Neurons and Cognition · Quantitative Biology 2023-08-04 David Lipshutz , Yanis Bahroun , Siavash Golkar , Anirvan M. Sengupta , Dmitri B. Chklovskii

There is an analogy that is often made between deep neural networks and actual brains, suggested by the nomenclature itself: the "neurons" in deep neural networks should correspond to neurons (or nerve cells, to avoid confusion) in the…

Machine Learning · Computer Science 2021-11-03 David I. Spivak , Timothy Hosgood
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