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Recent advances in 3D fully convolutional networks (FCN) have made it feasible to produce dense voxel-wise predictions of volumetric images. In this work, we show that a multi-class 3D FCN trained on manually labeled CT scans of several…

Computer Vision and Pattern Recognition · Computer Science 2018-04-13 Holger R. Roth , Hirohisa Oda , Xiangrong Zhou , Natsuki Shimizu , Ying Yang , Yuichiro Hayashi , Masahiro Oda , Michitaka Fujiwara , Kazunari Misawa , Kensaku Mori

Automatic multi-organ segmentation of the dual energy computed tomography (DECT) data can be beneficial for biomedical research and clinical applications. However, it is a challenging task. Recent advances in deep learning showed the…

Computer Vision and Pattern Recognition · Computer Science 2017-10-17 Shuqing Chen , Holger Roth , Sabrina Dorn , Matthias May , Alexander Cavallaro , Michael M. Lell , Marc Kachelrieß , Hirohisa Oda , Kensaku Mori , Andreas Maier

Segmentation of multiple organs-at-risk (OARs) is essential for radiation therapy treatment planning and other clinical applications. We developed an Automated deep Learning-based Abdominal Multi-Organ segmentation (ALAMO) framework based…

Image and Video Processing · Electrical Eng. & Systems 2020-08-25 Yuhua Chen , Dan Ruan , Jiayu Xiao , Lixia Wang , Bin Sun , Rola Saouaf , Wensha Yang , Debiao Li , Zhaoyang Fan

The ability to dynamically extend a model to new data and classes is critical for multiple organ and tumor segmentation. However, due to privacy regulations, accessing previous data and annotations can be problematic in the medical domain.…

Image and Video Processing · Electrical Eng. & Systems 2023-07-24 Yixiao Zhang , Xinyi Li , Huimiao Chen , Alan Yuille , Yaoyao Liu , Zongwei Zhou

A fully automatic technique for segmenting the liver and localizing its unhealthy tissues is a convenient tool in order to diagnose hepatic diseases and assess the response to the according treatments. In this work we propose a method to…

Computer Vision and Pattern Recognition · Computer Science 2017-12-01 Miriam Bellver , Kevis-Kokitsi Maninis , Jordi Pont-Tuset , Xavier Giro-i-Nieto , Jordi Torres , Luc Van Gool

Abdominal organ segmentation from CT and MRI is an essential prerequisite for surgical planning and computer-aided navigation systems. It is challenging due to the high variability in the shape, size, and position of abdominal organs.…

Computer Vision and Pattern Recognition · Computer Science 2023-10-31 Fabian Bongratz , Anne-Marie Rickmann , Christian Wachinger

Automating classification and segmentation process of abnormal regions in different body organs has a crucial role in most of medical imaging applications such as funduscopy, endoscopy, and dermoscopy. Detecting multiple abnormalities in…

Computer Vision and Pattern Recognition · Computer Science 2018-10-17 Mohsen Hajabdollahi , Reza Esfandiarpoor , Elyas Sabeti , Nader Karimi , Kayvan Najarian , S. M. Reza Soroushmehr , Shadrokh Samavi

Segmentation has been a major task in neuroimaging. A large number of automated methods have been developed for segmenting healthy and diseased brain tissues. In recent years, deep learning techniques have attracted a lot of attention as a…

Image and Video Processing · Electrical Eng. & Systems 2019-07-05 Jimit Doshi , Guray Erus , Mohamad Habes , Christos Davatzikos

In this work, we propose an adversarial attack-based data augmentation method to improve the deep-learning-based segmentation algorithm for the delineation of Organs-At-Risk (OAR) in abdominal Computed Tomography (CT) to facilitate…

Image and Video Processing · Electrical Eng. & Systems 2023-02-28 Shaoyan Pan , Shao-Yuan Lo , Min Huang , Chaoqiong Ma , Jacob Wynne , Tonghe Wang , Tian Liu , Xiaofeng Yang

Recent advances in deep learning, like 3D fully convolutional networks (FCNs), have improved the state-of-the-art in dense semantic segmentation of medical images. However, most network architectures require severely downsampling or…

Computer Vision and Pattern Recognition · Computer Science 2018-06-07 Holger R. Roth , Chen Shen , Hirohisa Oda , Takaaki Sugino , Masahiro Oda , Yuichiro Hayashi , Kazunari Misawa , Kensaku Mori

Automatic segmentation of abdominal organs in computed tomography (CT) images can support radiation therapy and image-guided surgery workflows. Developing of such automatic solutions remains challenging mainly owing to complex organ…

Image and Video Processing · Electrical Eng. & Systems 2023-05-22 Zefan Yang , Di Lin , Dong Ni , Yi Wang

Image segmentation is a fundamental and challenging problem in computer vision with applications spanning multiple areas, such as medical imaging, remote sensing, and autonomous vehicles. Recently, convolutional neural networks (CNNs) have…

Computer Vision and Pattern Recognition · Computer Science 2020-06-24 Ali Hatamizadeh

Segmentation of abdominal organs has been a comprehensive, yet unresolved, research field for many years. In the last decade, intensive developments in deep learning (DL) have introduced new state-of-the-art segmentation systems. In order…

Deep learning approaches based on convolutional neural networks (CNNs) have been successful in solving a number of problems in medical imaging, including image segmentation. In recent years, it has been shown that CNNs are vulnerable to…

Image and Video Processing · Electrical Eng. & Systems 2019-09-26 Liang Chen , Paul Bentley , Kensaku Mori , Kazunari Misawa , Michitaka Fujiwara , Daniel Rueckert

Proper segmentation of organs-at-risk is important for radiation therapy, surgical planning, and diagnostic decision-making in medical image analysis. While deep learning-based segmentation architectures have made significant progress, they…

Computer Vision and Pattern Recognition · Computer Science 2025-09-23 Riad Hassan , M. Rubaiyat Hossain Mondal , Sheikh Iqbal Ahamed , Fahad Mostafa , Md Mostafijur Rahman

Deep learning has shown great promise in the ability to automatically annotate organs in magnetic resonance imaging (MRI) scans, for example, of the brain. However, despite advancements in the field, the ability to accurately segment…

Image and Video Processing · Electrical Eng. & Systems 2024-03-26 Cosmin Ciausu , Deepa Krishnaswamy , Benjamin Billot , Steve Pieper , Ron Kikinis , Andrey Fedorov

Accurate image segmentation of the liver is a challenging problem owing to its large shape variability and unclear boundaries. Although the applications of fully convolutional neural networks (CNNs) have shown groundbreaking results,…

Computer Vision and Pattern Recognition · Computer Science 2021-01-26 Minyoung Chung , Jingyu Lee , Jeongjin Lee , Yeong-Gil Shin

Multi-organ segmentation in abdominal Computed Tomography (CT) images is of great importance for diagnosis of abdominal lesions and subsequent treatment planning. Though deep learning based methods have attained high performance, they rely…

Computer Vision and Pattern Recognition · Computer Science 2023-09-19 Meng Han , Xiangde Luo , Wenjun Liao , Shichuan Zhang , Shaoting Zhang , Guotai Wang

Recent advances in deep learning have led to robust automated tools for segmentation of abdominal computed tomography (CT). Meanwhile, segmentation of magnetic resonance imaging (MRI) is substantially more challenging due to the inherent…

Image and Video Processing · Electrical Eng. & Systems 2025-07-28 Deepa Krishnaswamy , Cosmin Ciausu , Steve Pieper , Ron Kikinis , Benjamin Billot , Andrey Fedorov

In this paper, we propose a novel medical image segmentation using iterative deep learning framework. We have combined an iterative learning approach and an encoder-decoder network to improve segmentation results, which enables to precisely…

Computer Vision and Pattern Recognition · Computer Science 2017-08-14 Jung Uk Kim , Hak Gu Kim , Yong Man Ro