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The message-passing mechanism underlying Graph Neural Networks (GNNs) is not naturally suited for heterophilic datasets, where adjacent nodes often have different labels. Most solutions to this problem remain confined to the task of node…

Machine Learning · Computer Science 2025-06-30 Andrea Giuseppe Di Francesco , Francesco Caso , Maria Sofia Bucarelli , Fabrizio Silvestri

Protein subcellular localization is an important factor in normal cellular processes and disease. While many protein localization resources treat it as static, protein localization is dynamic and heavily influenced by biological context.…

Molecular Networks · Quantitative Biology 2022-12-13 Chris S. Magnano , Anthony Gitter

Malware analysis techniques are divided into static and dynamic analysis. Both techniques can be bypassed by circumvention techniques such as obfuscation. In a series of works, the authors have promoted the use of symbolic executions…

Cryptography and Security · Computer Science 2022-04-13 Charles-Henry Bertrand Van Ouytsel , Axel Legay

Networks are ubiquitous in the real world. Link prediction, as one of the key problems for network-structured data, aims to predict whether there exists a link between two nodes. The traditional approaches are based on the explicit…

Machine Learning · Computer Science 2021-06-01 Wei Wu , Bin Li , Chuan Luo , Wolfgang Nejdl

Link prediction is one of the central problems in graph mining. However, recent studies highlight the importance of higher-order network analysis, where complex structures called motifs are the first-class citizens. We first show that…

Non-negative matrix factorization (NMF) has become a well-established class of methods for the analysis of non-negative data. In particular, a lot of effort has been devoted to probabilistic NMF, namely estimation or inference tasks in…

Machine Learning · Statistics 2021-02-26 Louis Filstroff , Olivier Gouvert , Cédric Févotte , Olivier Cappé

Multivariate graphs are prolific across many fields, including transportation and neuroscience. A key task in graph analysis is the exploration of connectivity, to, for example, analyze how signals flow through neurons, or to explore how…

An ongoing challenge for the requirements engineering of software product lines is to predict whether a new combination of features (units of functionality) will create an unwanted or even hazardous feature interaction. We thus seek to…

Software Engineering · Computer Science 2020-09-17 Seyedehzahra Khoshmanesh , Robyn Lutz

Inferring graph structure from observations on the nodes is an important and popular network science task. Departing from the more common inference of a single graph and motivated by social and biological networks, we study the problem of…

Machine Learning · Statistics 2020-10-19 Madeline Navarro , Yuhao Wang , Antonio G. Marques , Caroline Uhler , Santiago Segarra

Prediction algorithms typically assume the training data are independent samples, but in many modern applications samples come from individuals connected by a network. For example, in adolescent health studies of risk-taking behaviors,…

Methodology · Statistics 2018-06-26 Tianxi Li , Elizaveta Levina , Ji Zhu

Graphs play a crucial role in data mining and machine learning, representing real-world objects and interactions. As graph datasets grow, managing large, decentralized subgraphs becomes essential, particularly within federated learning…

Machine Learning · Computer Science 2024-10-21 Ömer Faruk Akgül , Rajgopal Kannan , Viktor Prasanna

Link prediction is an elemental challenge in network science, which has already found applications in guiding laboratorial experiments, digging out drug targets, recommending friends in social networks, probing mechanisms in network…

Physics and Society · Physics 2019-06-26 Ratha Pech , Dong Hao , Yan-Li Lee , Ye Yuan , Tao Zhou

The aim of link prediction is to forecast connections that are most likely to occur in the future, based on examples of previously observed links. A key insight is that it is useful to explicitly model network dynamics, how frequently links…

Social and Information Networks · Computer Science 2016-04-13 Alireza Hajibagheri , Gita Sukthankar , Kiran Lakkaraju

This paper aims to establish theoretical foundations of graph product multilayer networks (GPMNs), a family of multilayer networks that can be obtained as a graph product of two or more factor networks. Cartesian, direct (tensor), and…

Physics and Society · Physics 2017-09-05 Hiroki Sayama

Graphs and networks provide a canonical representation of relational data, with massive network data sets becoming increasingly prevalent across a variety of scientific fields. Although tools from mathematics and computer science have been…

Methodology · Statistics 2014-08-11 Benjamin P. Olding , Patrick J. Wolfe

In social networks, link prediction predicts missing links in current networks and new or dissolution links in future networks, is important for mining and analyzing the evolution of social networks. In the past decade, many works have been…

Social and Information Networks · Computer Science 2014-12-09 Peng Wang , Baowen Xu , Yurong Wu , Xiaoyu Zhou

Link prediction problem has increasingly become prominent in many domains such as social network analyses, bioinformatics experiments, transportation networks, criminal investigations and so forth. A variety of techniques has been developed…

Artificial Intelligence · Computer Science 2023-05-18 Safiye Ghasemi , Amin Zarei

The data in many disciplines such as social networks, web analysis, etc. is link-based, and the link structure can be exploited for many different data mining tasks. In this paper, we consider the problem of temporal link prediction: Given…

Numerical Analysis · Mathematics 2013-09-16 Daniel M. Dunlavy , Tamara G. Kolda , Evrim Acar

Many link prediction algorithms require the computation of a similarity metric on each vertex pair, which is quadratic in the number of vertices and infeasible for large networks. We develop a class of link prediction algorithms based on a…

Social and Information Networks · Computer Science 2017-04-10 Benjamin Pachev , Benjamin Webb

A temporal graph can be considered as a stream of links, each of which represents an interaction between two nodes at a certain time. On temporal graphs, link prediction is a common task, which aims to answer whether the query link is true…

Artificial Intelligence · Computer Science 2024-02-13 Bingqing Liu , Xikun Huang
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