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Science is conducted collaboratively, often requiring knowledge sharing about computational experiments. When experiments include only datasets, they can be shared using Uniform Resource Identifiers (URIs) or Digital Object Identifiers…

Digital Libraries · Computer Science 2017-09-12 Dai Hai Ton That , Gabriel Fils , Zhihao Yuan , Tanu Malik

AI systems are increasingly pervasive, yet information needed to decide whether and how to engage with them may not exist or be accessible. A user may not be able to verify whether a system has certain safety certifications. An investigator…

The drive for reproducibility in the computational sciences has provoked discussion and effort across a broad range of perspectives: technological, legislative/policy, education, and publishing. Discussion on these topics is not new, but…

Quantitative Methods · Quantitative Biology 2018-10-10 Daniel G. Hurley , Joseph Cursons , Matthew Faria , David M. Budden , Vijay Rajagopal , Edmund J. Crampin

Software citation has accelerated in astrophysics in the past decade, resulting in the field now having multiple trackable ways to cite computational methods. Yet most software authors do not specify how they would like their code to be…

Instrumentation and Methods for Astrophysics · Physics 2021-11-25 Alice Allen

Understanding how different information sources together transmit information is crucial in many domains. For example, understanding the neural code requires characterizing how different neurons contribute unique, redundant, or synergistic…

Neurons and Cognition · Quantitative Biology 2018-04-04 Daniel Chicharro , Giuseppe Pica , Stefano Panzeri

Ignoring human values in software development may disadvantage users by breaching their values and introducing biases in software. This can be mitigated by informing developers about the value implications of their choices and taking…

Software Engineering · Computer Science 2020-03-11 Davoud Mougouei

Software vulnerabilities remain a significant risk factor in achieving security objectives within software development organizations. This is especially true where either proprietary or open-source software (OSS) is included in the…

Software Engineering · Computer Science 2025-09-23 James J. Cusick

Statistical language models on source code have successfully assisted software engineering tasks. However, developers can create or pick arbitrary identifiers when writing source code. Freely chosen identifiers lead to the notorious…

Software Engineering · Computer Science 2022-01-07 Jieke Shi , Zhou Yang , Junda He , Bowen Xu , David Lo

Research software is crucial in the research process and the growth of Open Science underscores the importance of accessing research artifacts, like data and code, raising traceability challenges among outputs. While it is a clear principle…

Software Engineering · Computer Science 2025-07-31 Domhnall Carlin , Austen Rainer

Digital product passports (DPP) have been proposed in the European Ecodesign for Sustainable Products Regulation (ESPR) as a means to keep and provide product information that facilitates product reusage, reparation, and recycling. Thus,…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-10-22 Ismael Illán García , Francesc D. Muñoz-Escoí , Jordi Arjona Aroca , F. Javier Fernández-Bravo Peñuela

Context: Software systems are in continuous evolution through source code changes to fixing bugs, adding new functionalities and improving the internal architecture. All these practices are recorded in the version history, which can be…

Software Engineering · Computer Science 2020-01-17 Leandro Ungari Cayres , Bruno Santos de Lima , Rogério Eduardo Garcia

Even though computational reproducibility is widely accepted as necessary for research validation and reuse, it is often not considered during the research process. This is because reproducibility tools are typically stand-alone and require…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-03-04 Ana Trisovic , Chris R. Jones , Ben Couturier , Marco Clemencic

In this work, we propose CODE, an extension of existing work from the field of explainable AI that identifies class-specific recurring patterns to build a robust Out-of-Distribution (OoD) detection method for visual classifiers. CODE does…

Computer Vision and Pattern Recognition · Computer Science 2023-11-23 Romain Xu-Darme , Julien Girard-Satabin , Darryl Hond , Gabriele Incorvaia , Zakaria Chihani

In Open Source Software, the source code and any other resources available in a project can be viewed or reused by anyone subject to often permissive licensing restrictions. In contrast to some studies of dependency-based reuse supported…

Software Engineering · Computer Science 2024-02-12 Mahmoud Jahanshahi , Audris Mockus

Program code contains functions, variables, and data structures that are represented by names. To promote human understanding, these names should describe the role and use of the code elements they represent. But the names given by…

Software Engineering · Computer Science 2022-09-08 Moshe Munk , Dror G. Feitelson

Enabling observability in software systems brings many benefits. It can, for example, ease the identification of issues or the implementation of improvements. It is especially critical to be able to observe sustainability-related dimensions…

Software Engineering · Computer Science 2026-04-13 Klervie Toczé , Andrei Dragomir , Vincenzo Stoico , Patricia Lago

Software is an important tool for scholarly work, but software produced for research is in many cases not easily identifiable or discoverable. A potential first step in linking research and software is software identification. In this paper…

Digital Libraries · Computer Science 2023-03-01 Eva Maxfield Brown , Lindsey Schwartz , Richard Lewei Huang , Nicholas Weber

Object detection under imperfect data receives great attention recently. Weakly supervised object detection (WSOD) suffers from severe localization issues due to the lack of instance-level annotation, while semi-supervised object detection…

Computer Vision and Pattern Recognition · Computer Science 2022-03-31 Hanjun Li , Xingjia Pan , Ke Yan , Fan Tang , Wei-Shi Zheng

We introduce Repro, an open-source library which aims at improving the reproducibility and usability of research code. The library provides a lightweight Python API for running software released by researchers within Docker containers which…

Computation and Language · Computer Science 2022-05-02 Daniel Deutsch , Dan Roth

Accuracy is an important concern for suppliers of artificial intelligence (AI) services, but considerations beyond accuracy, such as safety (which includes fairness and explainability), security, and provenance, are also critical elements…

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