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On a Si(111) vicinal face near the structural transition temperature, the $1 \times 1$ structure and the $7 \times 7$ structure coexist in a terrace: the $1 \times 1$ structure is in the lower side of the step edge and the $7 \times 7$…

Materials Science · Physics 2009-11-10 Masahide Sato , Makio Uwaha , Yukio Saito

The dynamic effects, such as the steering and the screening effects during deposition, on an epitaxial growth (Cu/Cu(001)), is studied by kinetic Monte Carlo simulation that incorporates molecular dynamic simulation to rigorously take the…

Materials Science · Physics 2016-08-31 Jikeun Seo , Hye-Young Kim , J. -S. Kim

We present a hybrid stochastic model for the resuspension of micron-size particles from multilayer deposits in a fully-developed turbulent boundary layer. The rate of removal of particles from any given layer depends upon the rate of…

Fluid Dynamics · Physics 2012-06-12 F. Zhang , M. Reeks , M. Kissane , R. J. Perkins

Under an applied external load the global load-sharing fiber bundle model, with individual fiber strength thresholds sampled randomly from a probability distribution, will relax to an equilibrium state, or to complete bundle breakdown. The…

Statistical Mechanics · Physics 2010-09-20 Srutarshi Pradhan , Per C. Hemmer

The surface and bulk properties of a modified ballistic deposition model are investigated. The deposition rule interpolates between nearest and next-nearest neighbor ballistic deposition and the random deposition models. The stickiness of…

Statistical Mechanics · Physics 2015-06-17 Kasturi Banerjee , J. Shamanna , Subhankar Ray

The mechanical characteristics of fibers (of various materials), as well as of fiber bundles, are of primary importance for the design and the mechanical behavior of textiles, or of fibrous and composite materials. These characteristics are…

Soft Condensed Matter · Physics 2026-03-17 Jerome Weiss

Using computer simulations, we study a two-dimensional system of sterically interacting self-mobile run-and-tumble disk-shaped particles with an underlying periodic quasi-one-dimensional asymmetric substrate, and show that a rich variety of…

Soft Condensed Matter · Physics 2017-12-06 D. McDermott , C. J. Olson Reichhardt , C. Reichhardt

Two kinds of configurations involving steps on surfaces are reviewed. The first one results from an initially planar vicinal surface, i.e. slightly deviating from a high-symmetry (001) or (111) orientation. In some cases, these surfaces…

Statistical Mechanics · Physics 2007-05-23 Anna Chame , Sylvie Rousset , Hans P. Bonzel , Jacques Villain

The effect of blocking between different species occurring in one dimension is investigated here numerically in the case of particles following branching and annihilating random walk with two offsprings. It is shown that two-dimensional…

Statistical Mechanics · Physics 2009-10-31 Geza Odor

The existence of a very special ratcheting regime has recently been reported in a granular packing subjected to cyclic loading \cite{alonso04}. In this state, the system accumulates a small permanent deformation after each cycle. After a…

Materials Science · Physics 2016-08-16 R. García-Rojo , F. Alonso-Marroquín , H. J. Herrmann

Motivated by experiments on cell segregation, we present a two-species model of interacting particles, aiming at a quantitative description of this phenomenon. Under precise scaling hypothesis, we derive from the microscopic model a…

Analysis of PDEs · Mathematics 2019-06-04 J. Barré , P. Degond , D. Peurichard , E. Zatorska

We consider the TASEP on Z with two blocks of particles having different jump rates. We study the large time behavior of particles' positions. It depends both on the jump rates and the region we focus on, and we determine the complete…

Mathematical Physics · Physics 2010-03-03 Alexei Borodin , Patrik L. Ferrari , Tomohiro Sasamoto

The interaction between polymer brush and colloidal particles has been intensively studied in the last two decades. Here we consider a flat chain-grafted substrate immersed in a bath of active particles. Simulations show that an increase in…

Soft Condensed Matter · Physics 2017-05-17 Hui-shu Li , Bo-kai Zhang , Jian Li , Wen-de Tian , Kang Chen

The liquid-liquid phase separation of biomolecules is an important process for intracellular organization. Biomolecular sequence combinatorics leads to a large variety of proteins and nucleic acids which can interact to form a diversity of…

Soft Condensed Matter · Physics 2025-08-27 Aria S. Chaderjian , Sam Wilken , Omar A. Saleh

Bacteria develop resistance to antibiotics through various mechanisms, with the specific mechanism depending on the drug-bacteria pair. It remains unclear, however, which resistance mechanism best supports favorable treatment outcomes,…

Populations and Evolution · Quantitative Biology 2025-11-06 Ailin Zhang , Shigui Ruan , Xi Huo

Microbial growth and division are fundamental processes relevant to many areas of life science. Of particular interest are homeostasis mechanisms, which buffer growth and division from accumulating fluctuations over multiple cycles. These…

Cell Behavior · Quantitative Biology 2022-10-12 Lee Susman , Maryam Kohram , Harsh Vashistha , Jeffrey T. Nechleba , Hanna Salman , Naama Brenner

Monte Carlo simulations are employed to investigate the surface growth generated by deposition of particles of different sizes on a substrate, in one and two dimensions. The particles have a linear form, and occupy an integer number of…

Statistical Mechanics · Physics 2011-11-17 F. L. Forgerini , W. Figueiredo

We investigate how the dimensionality of the embedding space affects the microscopic crackling dynamics and the macroscopic response of heterogeneous materials. Using a fiber bundle model with localized load sharing computer simulations are…

Disordered Systems and Neural Networks · Physics 2019-03-01 Zsuzsa Danku , Geza Odor , Ferenc Kun

The incredible thermo-mechanical properties of biological materials arise from the microscopic scale due to a complex hierarchical mechanism, regulated by microinstabilities at the molecular level. The description of such complex structures…

Biological Physics · Physics 2022-10-26 Luca Bellino

Inhomogeneities in deposition may lead to formation of rough surfaces, whose height fluctuations can be probed directly by scanning microscopy, or indirectly by scattering. Analytical or numerical treatments of simple growth models suggest…

Condensed Matter · Physics 2009-10-28 Mehran Kardar