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Deep neural networks trained on Functional Connectivity (FC) networks extracted from functional Magnetic Resonance Imaging (fMRI) data have gained popularity due to the increasing availability of data and advances in model architectures,…

Machine Learning · Computer Science 2023-12-05 Jungwon Choi , Seongho Keum , EungGu Yun , Byung-Hoon Kim , Juho Lee

The dynamic characteristics of functional network connectivity have been widely acknowledged and studied. Both shared and unique information has been shown to be present in the connectomes. However, very little has been known about whether…

Neurons and Cognition · Quantitative Biology 2020-06-18 Biao Cai , Gemeng Zhang , Aiying Zhang , Li Xiao , Wenxing Hu , Julia M. Stephen , Tony W. Wilson , Vince D. Calhoun , Yu-Ping Wang

Functional connectivity (FC) is one of the most common inputs to fMRI-based predictive models, due to a combination of its simplicity and robustness. However, there may be a lack of theoretical models for the generation of FC. In this work,…

Neurons and Cognition · Quantitative Biology 2023-05-19 Anton Orlichenko , Gang Qu , Ziyu Zhou , Zhengming Ding , Yu-Ping Wang

Functional magnetic resonance imaging (fMRI) is widely used for studying and diagnosing brain disorders, with functional connectivity (FC) matrices providing powerful representations of large-scale neural interactions. However, existing…

Tissues and Organs · Quantitative Biology 2026-04-17 Qianyu Chen , Shujian Yu

The Identifiability Framework (If) has been shown to improve differential identifiability (reliability across-sessions and -sites, and differentiability across-subjects) of functional connectomes for a variety of fMRI tasks. But having a…

Neurons and Cognition · Quantitative Biology 2019-11-25 Meenusree Rajapandian , Enrico Amico , Kausar Abbas , Mario Ventresca , Joaquín Goñi

Feature-Imitating-Networks (FINs) are neural networks that are first trained to approximate closed-form statistical features (e.g. Entropy), and then embedded into other networks to enhance their performance. In this work, we perform the…

Image and Video Processing · Electrical Eng. & Systems 2024-04-24 Shangyang Min , Hassan B. Ebadian , Tuka Alhanai , Mohammad Mahdi Ghassemi

Functional connectomes (FCs) contain pairwise estimations of functional couplings based on pairs of brain regions activity. FCs are commonly represented as correlation matrices that are symmetric positive definite (SPD) lying on or inside…

In Emotion Recognition in Conversations (ERC), model decisions should align with nuanced human perception and ideally provide insights on the classification process. Standard encoder pre-trained language models (PLMs) are the…

Computation and Language · Computer Science 2026-05-05 Patrícia Pereira , Helena Moniz , Joao Paulo Carvalho

Population analyses of functional connectivity have provided a rich understanding of how brain function differs across time, individual, and cognitive task. An important but challenging task in such population analyses is the identification…

Social and Information Networks · Computer Science 2020-08-19 James D. Wilson , Melanie Baybay , Rishi Sankar , Paul Stillman , Abbie M. Popa

Graph theoretical analyses have become standard tools in modeling functional and anatomical connectivity in the brain. With the advent of connectomics, the primary graphs or networks of interest are structural connectome (derived from DTI…

Neurons and Cognition · Quantitative Biology 2022-07-07 Carlo Amodeo , Igor Fortel , Olusola Ajilore , Liang Zhan , Alex Leow , Theja Tulabandhula

In the rapidly evolving landscape of artificial intelligence, generative models such as Generative Adversarial Networks (GANs) and Diffusion Models have become cornerstone technologies, driving innovation in diverse fields from art creation…

Machine Learning · Computer Science 2024-08-01 Jack He , Jianxing Zhao , Andrew Bai , Cho-Jui Hsieh

Graph Neural Networks (GNNs) are a framework for graph representation learning, where a model learns to generate low dimensional node embeddings that encapsulate structural and feature-related information. GNNs are usually trained in an…

Machine Learning · Computer Science 2020-12-15 Davide Buffelli , Fabio Vandin

Graph neural networks (GNNs), which capture graph structures via a feature aggregation mechanism following the graph embedding framework, have demonstrated a powerful ability to support various tasks. According to the topology properties…

Machine Learning · Computer Science 2025-05-28 Meng Qin , Jiahong Liu , Irwin King

Significant progress has been made using fMRI to characterize the brain changes that occur in ASD, a complex neuro-developmental disorder. However, due to the high dimensionality and low signal-to-noise ratio of fMRI, embedding informative…

Image and Video Processing · Electrical Eng. & Systems 2019-08-15 Xiaoxiao Li , Nicha C. Dvornek , Juntang Zhuang , Pamela Ventola , James Duncan

Resting-state functional MRI (rsfMRI) yields functional connectomes that can serve as cognitive fingerprints of individuals. Connectomic fingerprints have proven useful in many machine learning tasks, such as predicting subject-specific…

Machine Learning · Computer Science 2020-08-10 Gia H. Ngo , Meenakshi Khosla , Keith Jamison , Amy Kuceyeski , Mert R. Sabuncu

Non-invasive electrophysiology lacks methods that accurately reconstruct whole-brain spatiotemporal dynamics while incorporating individual cortical geometry, leaving current electroencephalography and magnetoencephalography source imaging…

Neurons and Cognition · Quantitative Biology 2026-04-29 Song Wang , Kexin Lou , Chen Wei , Zhiyuan Sheng , Jiahao Tang , Kaining Peng , Xinke Shen , Shuhao Mei , Liang Chen , Dongfeng Gu , Quanying Liu

In this work, we focus on the challenging task, neuro-disease classification, using functional magnetic resonance imaging (fMRI). In population graph-based disease analysis, graph convolutional neural networks (GCNs) have achieved…

Machine Learning · Computer Science 2022-11-29 Liang Peng , Nan Wang , Jie Xu , Xiaofeng Zhu , Xiaoxiao Li

Objective: Multi-modal functional magnetic resonance imaging (fMRI) can be used to make predictions about individual behavioral and cognitive traits based on brain connectivity networks. Methods: To take advantage of complementary…

Machine Learning · Computer Science 2024-08-27 Gang Qu , Li Xiao , Wenxing Hu , Kun Zhang , Vince D. Calhoun , Yu-Ping Wang

There is increasing evidence to suggest functional connectivity networks are non-stationary. This has lead to the development of novel methodologies with which to accurately estimate time-varying functional connectivity networks. Many of…

The customization of recommended content to users holds significant importance in enhancing user experiences across a wide spectrum of applications such as e-commerce, music, and shopping. Graph-based methods have achieved considerable…

Information Retrieval · Computer Science 2023-12-05 Narges Sadat Fazeli Dehkordi , Hadi Zare , Parham Moradi , Mahdi Jalili