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This paper presents maplet, an open-source R package for the creation of highly customizable, fully reproducible statistical pipelines for omics data analysis, with a special focus on metabolomics-based methods. It builds on the…
Computational models are quantitative representations of systems. By analyzing and comparing the outputs of such models, it is possible to gain a better understanding of the system itself. Though as the complexity of model outputs…
We introduce NetworKit, an open-source software package for analyzing the structure of large complex networks. Appropriate algorithmic solutions are required to handle increasingly common large graph data sets containing up to billions of…
Time-Spatial data plays a crucial role for different fields such as traffic management. These data can be collected via devices such as surveillance sensors or tracking systems. However, how to efficiently an- alyze and visualize these data…
Extracting semantic representations from mobile user interfaces (UI) and using the representations for designers' decision-making processes have shown the potential to be effective computational design support tools. Current approaches rely…
Most issue tracking systems for open source software (OSS) development include features for community members to embed visual contents, such as images and videos, to enhance the discussion. Although playing an important role, there is…
Large-scale analysis of pedestrian infrastructures, particularly sidewalks, is critical to human-centric urban planning and design. Benefiting from the rich data set of planimetric features and high-resolution orthoimages provided through…
Graphs, such as social networks, word co-occurrence networks, and communication networks, occur naturally in various real-world applications. Analyzing them yields insight into the structure of society, language, and different patterns of…
This study develops FusionTransNet, a framework designed for Origin-Destination (OD) flow predictions within smart and multimodal urban transportation systems. Urban transportation complexity arises from the spatiotemporal interactions…
The visualization and analysis of street and pedestrian networks are important to various domain experts, including urban planners, climate researchers, and health experts. This has led to the development of new techniques for street and…
Despite the widespread adoption of computational notebooks, little is known about best practices for their usage in collaborative contexts. In this paper, we fill this gap by eliciting a catalog of best practices for collaborative data…
An important aspect of urban planning is understanding crowd levels at various locations, which typically require the use of physical sensors. Such sensors are potentially costly and time consuming to implement on a large scale. To address…
In the last decade, temporal networks and static and temporal hypergraphs have enabled modelling connectivity and spreading processes in a wide array of real-world complex systems such as economic transactions, information spreading, brain…
Network data mining has become an important area of study due to the large number of problems it can be applied to. This paper presents NOESIS, an open source framework for network data mining that provides a large collection of network…
We describe a project-based introduction to reproducible and collaborative neuroimaging analysis. Traditional teaching on neuroimaging usually consists of a series of lectures that emphasize the big picture rather than the foundations on…
This master thesis focuses on practical application of Convolutional Neural Network models on the task of road labeling with bike attractivity score. We start with an abstraction of real world locations into nodes and scored edges in…
Despite the growing availability of 3D urban datasets, extracting insights remains challenging due to computational bottlenecks and the complexity of interacting with data. In fact, the intricate geometry of 3D urban environments results in…
We introduce TopoX, a Python software suite that provides reliable and user-friendly building blocks for computing and machine learning on topological domains that extend graphs: hypergraphs, simplicial, cellular, path and combinatorial…
In the field of urban planning, road network system planning is often the first step and the main purpose of urban planning is to create a spatial configuration of different functions such as residence, education, business, etc. Generally…
Structural equation modeling (SEM) is a popular tool in the social and behavioural sciences, where it is being applied to ever more complex data types. The high-dimensional data produced by modern sensors, brain images, or (epi)genetic…