Related papers: An efficient sampling algorithm for difficult tree…
Tree search algorithms, such as branch-and-bound, are the most widely used tools for solving combinatorial and nonconvex problems. For example, they are the foremost method for solving (mixed) integer programs and constraint satisfaction…
The Aho, Hopcroft and Ullman (AHU) algorithm has been the state of the art since the 1970s for determining in linear time whether two unordered rooted trees are isomorphic or not. However, it has been criticized (by Campbell and Radford)…
Decision trees are well-known due to their ease of interpretability. To improve accuracy, we need to grow deep trees or ensembles of trees. These are hard to interpret, offsetting their original benefits. Shapley values have recently become…
This paper presents a new kind of self-balancing ternary search trie that uses a randomized balancing strategy adapted from Aragon and Seidel's randomized binary search trees ("treaps"). After any sequence of insertions and deletions of…
Optimal transport provides a metric which quantifies the dissimilarity between probability measures. For measures supported in discrete metric spaces, finding the optimal transport distance has cubic time complexity in the size of the…
An ordered labeled tree is a tree in which the nodes are labeled and the left-to-right order among siblings is relevant. The edit distance between two ordered labeled trees is the minimum cost of changing one tree into the other through a…
In binary jumbled pattern matching we wish to preprocess a binary string $S$ in order to answer queries $(i,j)$ which ask for a substring of $S$ that is of size $i$ and has exactly $j$ 1-bits. The problem naturally generalizes to…
A widely used method for determining the similarity of two labeled trees is to compute a maximum agreement subtree of the two trees. Previous work on this similarity measure is only concerned with the comparison of labeled trees of two…
We provide a simple method and relevant theoretical analysis for efficiently estimating higher-order lp distances. While the analysis mainly focuses on l4, our methodology extends naturally to p = 6,8,10..., (i.e., when p is even).…
Cartesian tree matching is the problem of finding all substrings of a given text which have the same Cartesian trees as that of a given pattern. So far there is one linear-time solution for Cartesian tree matching, which is based on the KMP…
The mutational heterogeneity of tumours can be described with a tree representing the evolutionary history of the tumour. With noisy sequencing data there may be uncertainty in the inferred tree structure, while we may also wish to study…
The arc-routing problems are known to be notoriously hard. We study here a natural arc-routing problem on trees and more generally on bounded tree-width graphs and surprisingly show that it can be solved in a polynomial time. This implies a…
Splay trees are a simple and efficient dynamic data structure, invented by Sleator and Tarjan. The basic primitive for transforming a binary tree in this scheme is a rotation. Sleator, Tarjan, and Thurston proved that the maximum rotation…
We consider the problem of designing sublinear time algorithms for estimating the cost of a minimum metric traveling salesman (TSP) tour. Specifically, given access to a $n \times n$ distance matrix $D$ that specifies pairwise distances…
In the length-constrained minimum spanning tree (MST) problem, we are given an $n$-node edge-weighted graph $G$ and a length constraint $h \geq 1$. Our goal is to find a spanning tree of $G$ whose diameter is at most $h$ with minimum…
We design a 3/2 approximation algorithm for the Generalized Steiner Tree problem (GST) in metrics with distances 1 and 2. This is the first polynomial time approximation algorithm for a wide class of non-geometric metric GST instances with…
The subtree prune-and-regraft (SPR) distance metric is a fundamental way of comparing evolutionary trees. It has wide-ranging applications, such as to study lateral genetic transfer, viral recombination, and Markov chain Monte Carlo…
We study the problem of circular seriation, where we are given a matrix of pairwise dissimilarities between $n$ objects, and the goal is to find a {\em circular order} of the objects in a manner that is consistent with their dissimilarity.…
Assume we are given a set of items from a general metric space, but we neither have access to the representation of the data nor to the distances between data points. Instead, suppose that we can actively choose a triplet of items (A,B,C)…
It is well known that, given \(b\ge 0\), finding an $(a,b)$-trapping set with the minimum \(a\) in a binary linear code is NP-hard. In this paper, we demonstrate that this problem can be solved with linear complexity with respect to the…