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This paper provides an upper bound for several subsets of maximal repeats and maximal pairs in compressed strings and also presents a formerly unknown relationship between maximal pairs and the run-length Burrows-Wheeler transform. This…
An exponent-string is an extension of traditional strings that can incorporate real-numbered exponents, indicating the quantity of characters. This novel representation overcomes the limitations of traditional discrete string by enabling…
Binary self-dual codes with large minimum distances, such as the extended Hamming code and the Golay code, are fascinating objects in the coding theory. They are closely related to sporadic simple groups, lattices and invariant theory. A…
Let $\mathbb{F}_q$ be the finite field of $q$ elements. In this paper we obtain bounds on the following counting problem: given a polynomial $f(x)\in \mathbb{F}_q[x]$ of degree $k+m$ and a non-negative integer $r$, count the number of…
Motivated by applications in DNA storage, we study a setting in which strings are affected by tandem-duplication errors. In particular, we look at two settings: disjoint tandem-duplication errors, and equal-length tandem-duplication errors.…
There are an infinite number of type IIB superstrings in ten dimensions, called (p,q) strings, that are labeled by two distinct string charges. They can form string junctions and string networks. These are the key to understanding the…
We study stringy fluctuations as a source for corrections to the Wilson loop as obtained from the superstrings on (adS_5 x S^5)/ N=4 SYM correspondence. We give a formal expression in terms of determinants of two dimensional operators for…
We study the number of distance queries needed to identify certain properties of a hidden tree $T$ on $n$ vertices. A distance query consists of two vertices $x,y$, and the answer is the distance of $x$ and $y$ in $T$. We determine the…
A basic problem for the constant dimension subspace coding is to determine the maximal possible size A_q (n, d, k) of a set of k-dimensional subspaces in Fnq such that the subspace distance satisfies d(U, V )> or =d for any two different…
We consider distance labeling schemes for trees: given a tree with $n$ nodes, label the nodes with binary strings such that, given the labels of any two nodes, one can determine, by looking only at the labels, the distance in the tree…
As well known the rotation distance D(S,T) between two binary trees S, T of n vertices is the minimum number of rotations of pairs of vertices to transform S into T. We introduce the new operation of chain rotation on a tree, involving two…
The reconstruction problem for permutations on $n$ elements from their erroneous patterns which are distorted by transpositions is presented in this paper. It is shown that for any $n \geq 3$ an unknown permutation is uniquely…
In this paper we study a variant of string pattern matching which deals with tuples of strings known as \textit{multi-track strings}. Multi-track strings are a generalisation of strings (or \textit{single-track strings}) that have primarily…
We investigate the transverse fluctuations of the confining string connecting two static quarks in (2+1)-d SU(2) Yang-Mills theory using Monte Carlo calculations. The exponentially suppressed signal is extracted from the large noise by a…
Non-overlapping codes are a set of codewords in $\bigcup_{n \ge 2} \mathbb{Z}_q^n$, where $\mathbb{Z}_q = \{0,1,\dots,q-1\}$, such that, the prefix of each codeword is not a suffix of any codeword in the set, including itself; and for…
The study of Armstrong codes is motivated by the problem of understanding complexities of dependencies in relational database systems, where attributes have bounded domains. A $(q,k,n)$-Armstrong code is a $q$-ary code of length $n$ with…
Distances on symbolic musical sequences are needed for a variety of applications, from music retrieval to automatic music generation. These musical sequences belong to a given corpus (or style) and it is obvious that a good distance on…
The study of constant-weight codes in $\ell_1$-metric was motivated by the duplication-correcting problem for data storage in live DNA. It is interesting to determine the maximum size of a code given the length $n$, weight $w$, minimum…
A $q$-ary code $C$ of length $n$ is a set of $n$-dimensional vectors (code words) with entries in $\{0, \ldots, q-1\}$. We say $C$ has constant weight $w$ if each code word has exactly $w$ nonzero entries. We say $C$ has minimum distance…
Dynamic Time Warping (DTW) is a widely used similarity measure for comparing strings that encode time series data, with applications to areas including bioinformatics, signature verification, and speech recognition. The standard…