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We use a combination of analytic models and computer simulations to gain insight into the dynamics of evolution. Our results suggest that certain interesting phenomena should eventually emerge from the fossil record. For example, there…

Populations and Evolution · Quantitative Biology 2007-05-23 Stuart Samuel , Gezhi Weng

A central problem in biology is to understand how organisms evolve and adapt to their environment by acquiring variations in the observable characteristics or traits of species across the tree of life. With the growing availability of…

Isogenic Escherichia coli growing exponentially in a constant environment display large variation in growth-rates, division-sizes and generation-times. It is unclear how these seemingly random cell cycles can be reconciled with the precise…

Quantitative Methods · Quantitative Biology 2015-10-14 Mats Wallden , David Fange , Özden Baltekin , Johan Elf

We consider the hydrodynamic behavior of some conservative particle systems with degenerate jump rates without exclusive constraints. More precisely, we study the particle systems without restrictions on the total number of particles per…

Probability · Mathematics 2017-05-01 Makiko Sasada

Using a numerical library for arbitrary precision arithmetic I study the irregular dependence of the diffusion coefficient on the slope of a piecewise linear map defining a dynamical system. I find that the graph of the diffusion…

Chaotic Dynamics · Physics 2007-05-23 Zbigniew Koza

In this letter, we focus on the size effect of granular column collapses, which are potentially connected to the dynamics of complex geophysical flows, even if the link between microscopic structures of granular assemblies and their…

Soft Condensed Matter · Physics 2022-01-21 Teng Man , Herbert E. Huppert , Ling Li , Sergio Andres Galindo-Torres

Monod's model describes the growth of microorganisms using a hyperbolic function of extracellular resource concentration. Under fluctuating or limited resource concentrations this model performs poorly against experimental data, motivating…

Populations and Evolution · Quantitative Biology 2022-12-29 Mohammad M. Amirian , Andrew J. Irwin , Zoe V. Finkel

Evolutionary branching is analysed in a stochastic, individual-based population model under mutation and selection. In such models, the common assumption is that individual reproduction and life career are characterised by values of a…

Populations and Evolution · Quantitative Biology 2025-10-01 S. Sagitov , B. Mehlig , P. Jagers , V. Vatutin

We use state-of-the-art molecular dynamics simulations to study hydrodynamic effects on aging during kinetics of phase separation in a fluid mixture. The domain growth law shows a crossover from a diffusive regime to a viscous hydrodynamic…

Statistical Mechanics · Physics 2015-06-12 Shaista Ahmad , Federico Corberi , Subir K. Das , Eugenio Lippiello , Sanjay Puri , Marco Zannetti

We investigate the impact of cyclic competition on pattern formation in the rock-paper-scissors game. By separately considering random and prepared initial conditions, we observe a critical influence of the competition rate $p$ on the…

Populations and Evolution · Quantitative Biology 2011-08-09 Luo-Luo Jiang , Tao Zhou , Matjaz Perc , Bing-Hong Wang

Local-box hydrodynamical model atmospheres provide statistical information about the spatial dependence, as well as temporal evolution, of a star's emergent radiation field. Here, we consider late-type stellar atmospheres for which temporal…

Astrophysics · Physics 2009-11-11 Hans-G. Ludwig

Eukaryotic cell motility is crucial during development, wound healing, the immune response, and cancer metastasis. Some eukaryotic cells can swim, but cells more commonly adhere to and crawl along the extracellular matrix. We study the…

Cell Behavior · Quantitative Biology 2019-09-02 Melissa H. Mai , Brian A. Camley

We explore the impact of dynamical friction on scales where the linear growth factor and the spherical collapse model can be applied and show its influence on the evolution of perturbations. In particular, considering smooth and clustering…

Cosmology and Nongalactic Astrophysics · Physics 2025-03-25 Francesco Pace , Orlando Luongo , Antonino Del Popolo

Unlike coffee and cream that homogenize when stirred, growing micro-organisms (e.g., bacteria, baker's yeast) can actively kill each other and avoid mixing. How do such antagonistic interactions impact the growth and survival of competing…

Populations and Evolution · Quantitative Biology 2025-04-01 Jonathan Bauermann , Roberto Benzi , David R. Nelson , Suraj Shankar , Federico Toschi

Microbial communities are ubiquitous in nature and come in a multitude of forms, ranging from communities dominated by a handful of species to communities containing a wide variety of metabolically distinct organisms. This huge range in…

Biological Physics · Physics 2021-11-02 Amir Erez , Jaime G. Lopez , Yigal Meir , Ned S. Wingreen

Cyclic dominance between species may yield spiral waves that are known to provide a mechanism enabling persistent species coexistence. This observation holds true even in presence of spatial heterogeneity in the form of quenched disorder.…

Populations and Evolution · Quantitative Biology 2020-02-05 Ryan Baker , Michel Pleimling

Darwin introduced the concept of the "living fossil" to describe species belonging to lineages that have experienced little evolutionary change, and suggested that species in more slowly evolving lineages are more prone to extinction (1).…

Genomics · Quantitative Biology 2013-02-12 Bianca Sclavi , John Herrick

On the viewpoint of corpuscular model an electromagnetic radiation can be regarded as a system composed of photons with different energies and momenta, which provides us a method being different from the Maxwell wave theory to describe the…

Plasma Physics · Physics 2013-02-27 Zhigang Bu , Yuee Luo , Hehe Li , Wenbo Chen , Peiyong Ji

The marine microbial food web plays a central role in the global carbon cycle. Our mechanistic understanding of the ocean, however, is biased towards its larger constituents, while rates and biomass fluxes in the microbial food web are…

Biological Physics · Physics 2022-12-21 Harshith Bachimanchi , Benjamin Midtvedt , Daniel Midtvedt , Erik Selander , Giovanni Volpe

The coexistence of multiple phytoplankton species despite their reliance on similar resources is often explained with mean-field models assuming mixed populations. In reality, observations of phytoplankton indicate spatial aggregation at…

Populations and Evolution · Quantitative Biology 2024-04-23 Coralie Picoche , William R. Young , Frédéric Barraquand