Related papers: Effects of depth and evolving rate on phytoplankto…
Ecological interactions among phytoplankton occur in a moving fluid environment. Oceanic flows can modulate the competition and coexistence between phytoplankton populations, which in turn can affect ecosystem function and biogeochemical…
Co-limitation of marine phytoplankton growth by light and nutrient, both of which are essential for phytoplankton, leads to complex dynamic behavior and a wide array of coherent patterns. The building blocks of this array can be considered…
The ocean is filled with microscopic microalgae called phytoplankton, which together are responsible for as much photosynthesis as all plants on land combined. Our ability to predict their response to the warming ocean relies on…
Fluctuations in a fluid are strongly affected by the presence of a macroscopic gradient making them long-ranged and enhancing their amplitude. While small-scale fluctuations exhibit diffusive lifetimes, larger-scale fluctuations live…
I consider how cell shape and environmental geometry affect the rate of nutrient capture and the consequent maximum growth rate of a cell, focusing on rod-like species like \textit{E.\ coli}. Simple modeling immediately implies that it is…
This paper is devoted to a nonlocal reaction-diffusion-advection model that describes the spatial dynamics of freshwater organisms in a river with a directional motion. Our goal is to investigate how the advection rate affects the dynamic…
We present a model for a biological reactor in which bacteria tend to aggregate in flocs, as encountered in wastewater treatment plants. The influence of this flocculation on the growth dynamics of the bacteria is studied. We argue that a…
The day-night cycle drives the largest biomass migration on Earth: the diel vertical migration (DVM) of aquatic organisms. Here, we present a three-dimensional agent-based model that incorporates photokinesis, gyrotaxis, and stochastic…
The fundamental processes of biological development are governed by multiple signaling molecules that create non-uniform concentration profiles known as morphogen gradients. It is widely believed that the establishment of morphogen…
Entropy plays a key role in statistical physics of complex systems, which in general exhibit diverse aspects of emergence on different scales. However, it still remains not fully resolved how entropy varies with the coarse-graining level…
Turbulence plays a major role in shaping marine community structure as it affects organism dispersal and guides fundamental ecological interactions. Below oceanographic mesoscale dynamics, turbulence also impinges on subtle…
The evolution of dispersal rate is studied with a model of several local populations linked by dispersal. Three dispersal strategies are considered where all, half, or none of the offspring disperse. The spatial scale (number of patches)…
The quantitative description of marine systems is constrained by a major issue of scale separation: most marine biochemical processes occur at sub-centimeter scales, while the contribution to the Earth's biogeochemical cycles is expressed…
We explore the growth of structure in multi-species wave (and particle) dark matter. We derive the evolution of the power spectrum of total density contrasts for an arbitrary number of component species, density fractions, and initial field…
Plankton constitutes the productive base of aquatic ecosystems and plays an essential role in the global carbon cycle. The impact of hydrodynamic conditions on the biological activity of plankton species can manifest in a variety of…
In the recent past observational and modelling studies have shown that the vertical displacement of water parcels, and therefore, phytoplankton particles in regions of deep-reaching convection plays a key role in late winter/early spring…
A new model for biological growth is introduced that couples the geometry of an organism (or part of the organism) to the flow and deposition of material. The model has three dynamical variables (a) a Riemann metric tensor for the geometry,…
We study how changes in population size and fluctuating environmental conditions influence the establishment of seed banks in plants. Our model is a modification of the Wright-Fisher model with seed bank, introduced by Kaj, Krone and…
This study investigates the influence of two factors that change the mixed layer depth and can potentially contribute to the phytoplankton sustenance over winter: 1) variability of air-sea fluxes and 2) three-dimensional processes arising…
The present work investigates environmental effects on the growth of fungal colonies of P. vitreus by using a lattice-free discrete modelling approach called FGM (Fuhr et al. (2010), arXiv:1101.1747), in which hyphae and nutrients are…