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Motivated by polymer-based data-storage platforms that use chains of binary synthetic polymers as the recording media and read the content via tandem mass spectrometers, we propose a new family of codes that allows for both unique string…

Information Theory · Computer Science 2021-06-29 Srilakshmi Pattabiraman , Ryan Gabrys , Olgica Milenkovic

Motivated by polymer-based data-storage platforms that use chains of binary synthetic polymers as the recording media and read the content via tandem mass spectrometers, we propose a new family of codes that allows for unique string…

Information Theory · Computer Science 2019-04-22 Srilakshmi Pattabiraman , Ryan Gabrys , Olgica Milenkovic

Synthetic polymer-based storage seems to be a particularly promising candidate that could help to cope with the ever-increasing demand for archival storage requirements. It involves designing molecules of distinct masses to represent the…

Information Theory · Computer Science 2026-04-02 Anisha Banerjee , Antonia Wachter-Zeh , Eitan Yaakobi

The number of zeros and the number of ones in a binary string are referred to as the composition of the string, and the prefix-suffix compositions of a string are a multiset formed by the compositions of the prefixes and suffixes of all…

Information Theory · Computer Science 2025-03-18 Zitan Chen

The problem of reconstructing strings from substring information has found many applications due to its importance in genomic data sequencing and DNA- and polymer-based data storage. One practically important and challenging paradigm…

Information Theory · Computer Science 2021-10-07 Ryan Gabrys , Srilakshmi Pattabiraman , Olgica Milenkovic

Motivated by applications in polymer-based data storage, we study the problem of reconstructing a string from part of its composition multiset. We give a full description of the structure of the strings that cannot be uniquely reconstructed…

Information Theory · Computer Science 2022-10-18 Zuo Ye , Ohad Elishco

We consider the problem of binary string reconstruction from the multiset of its substring compositions, i.e., referred to as the substring composition multiset, first introduced and studied by Acharya et al. We introduce a new algorithm…

Information Theory · Computer Science 2023-06-05 Utkarsh Gupta , Hessam Mahdavifar

The problem of reconstructing strings from their substring spectra has a long history and in its most simple incarnation asks for determining under which conditions the spectrum uniquely determines the string. We study the problem of coded…

Information Theory · Computer Science 2019-04-24 Ryan Gabrys , Olgica Milenkovic

Data storage in DNA is developing as a possible solution for archival digital data. Recently, to further increase the potential capacity of DNA-based data storage systems, the combinatorial composite DNA synthesis method was suggested. This…

Information Theory · Computer Science 2024-05-28 Omer Sabary , Inbal Preuss , Ryan Gabrys , Zohar Yakhini , Leon Anavy , Eitan Yaakobi

In this paper we present a new algorithm for Polynomial Linear System Solving (via evaluation/interpolation) with errors. In this scenario, errors can occur in the black box evaluation step. We improve the bound on the number of errors that…

Information Theory · Computer Science 2021-02-09 E. Guerrini , R. Lebreton , I. Zappatore

Motivated by mass-spectrometry protein sequencing, we consider a simply-stated problem of reconstructing a string from the multiset of its substring compositions. We show that all strings of length 7, one less than a prime, or one less than…

Discrete Mathematics · Computer Science 2014-03-12 Jayadev Acharya , Hirakendu Das , Olgica Milenkovic , Alon Orlitsky , Shengjun Pan

The problem of storing large amounts of information safely for a long period of time has become essential. One of the most promising new data storage mediums are the polymer-based data storage systems, like the DNA-storage system. These…

Information Theory · Computer Science 2025-04-21 Ville Junnila , Tero Laihonen , Tuomo Lehtilä

A method for concatenating quantum error-correcting codes is presented. The method is applicable to a wide class of quantum error-correcting codes known as Calderbank-Shor-Steane (CSS) codes. As a result, codes that achieve a high rate in…

Quantum Physics · Physics 2016-11-17 Mitsuru Hamada

Motivated by studies of data retrieval in polymer-based storage systems, we consider the problem of reconstructing a multiset of binary strings that have the same length and the same weight from the compositions of their prefixes and…

Discrete Mathematics · Computer Science 2024-11-07 Yaoyu Yang , Zitan Chen

In modern practical data centers, storage nodes are usually organized into equally sized groups, which is called racks. The cost of cross-rack communication is much more expensive compared with the intra-rack communication cost. The codes…

Information Theory · Computer Science 2019-11-20 Lingfei Jin , Gaojun Luo , Chaoping Xing

We present error-correcting codes that achieve the information-theoretically best possible trade-off between the rate and error-correction radius. Specifically, for every $0 < R < 1$ and $\eps> 0$, we present an explicit construction of…

Information Theory · Computer Science 2007-10-08 Venkatesan Guruswami , Atri Rudra

We investigate the usage of highly efficient error correcting codes of multilevel systems to protect encoded quantum information from erasure errors and implementation to repetitively correct these errors. Our scheme makes use of quantum…

Quantum Physics · Physics 2017-01-23 Sreraman Muralidharan , Chang-Ling Zou , Linshu Li , Jianming Wen , Liang Jiang

Reed-Solomon (RS) codes are widely used to correct errors in storage systems. Finding the error locator polynomial is one of the key steps in the error correction procedure of RS codes. Modular Approach (MA) is an effective algorithm for…

Information Theory · Computer Science 2024-07-30 Zhengyi Jiang , Hao Shi , Zhongyi Huang , Linqi Song , Bo Bai , Gong Zhang , Hanxu Hou

Error-correcting codes are a method for representing data, so that one can recover the original information even if some parts of it were corrupted. The basic idea, which dates back to the revolutionary work of Shannon and Hamming about a…

Information Theory · Computer Science 2026-03-05 Mrinal Kumar , Noga Ron-Zewi

A distributed storage system stores data across multiple nodes, with the primary objective of enabling efficient data recovery even in the event of node failures. The main goal of an exact repair scheme is to recover the data from a failed…

Information Theory · Computer Science 2026-01-05 Hiram H. López , Gretchen L. Matthews , Daniel Valvo
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