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Jupyter Notebook is the tool of choice of many data scientists in the early stages of ML workflows. The notebook format, however, has been criticized for inducing bad programming practices; indeed, researchers have already shown that…

Software Engineering · Computer Science 2022-05-25 Luigi Quaranta , Fabio Calefato , Filippo Lanubile

Grading student assignments in STEM courses is a laborious and repetitive task for tutors, often requiring a week to assess an entire class. For students, this delay of feedback prevents iterating on incorrect solutions, hampers learning,…

Artificial Intelligence · Computer Science 2025-02-26 Nils Wandel , David Stotko , Alexander Schier , Reinhard Klein

Background. Jupyter notebooks are one of the main tools used by data scientists. Notebooks include features (configuration scripts, markdown, images, etc.) that make them challenging to analyze compared to traditional software. As a result,…

Software Engineering · Computer Science 2025-07-28 Wenyuan Jiang , Diany Pressato , Harsh Darji , Thibaud Lutellier

More than ninety percent of published Jupyter notebooks do not state dependencies on external packages. This makes them non-executable and thus hinders reproducibility of scientific results. We present SnifferDog, an approach that 1)…

Software Engineering · Computer Science 2021-03-05 Jiawei Wang , Li Li , Andreas Zeller

Computational notebooks -- such as Jupyter or Colab -- combine text and data analysis code. They have become ubiquitous in the world of data science and exploratory data analysis. Since these notebooks present a different programming…

Software Engineering · Computer Science 2022-07-20 Derek Robinson , Neil A. Ernst , Enrique Larios Vargas , Margaret-Anne D. Storey

By bringing together code, text, and examples, Jupyter notebooks have become one of the most popular means to produce scientific results in a productive and reproducible way. As many of the notebook authors are experts in their scientific…

Software Engineering · Computer Science 2019-06-13 Jiawei Wang , Li Li , Andreas Zeller

Jupyter Notebooks are an enormously popular tool for creating and narrating computational research projects. They also have enormous potential for creating reproducible scientific research artifacts. Capturing the complete state of a…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-10-18 Dimuthu Wannipurage , Suresh Marru , Marlon Pierce

Jupyter notebooks allow to bundle executable code with its documentation and output in one interactive environment, and they represent a popular mechanism to document and share computational workflows, including for research publications.…

Computational Engineering, Finance, and Science · Computer Science 2022-09-12 Sheeba Samuel , Daniel Mietchen

Computational notebooks, such as Jupyter, have been widely adopted by data scientists to write code for analyzing and visualizing data. Despite their growing adoption and popularity, there has been no thorough study to understand Jupyter…

This paper proposes the use of notebooks for the design documentation and tool interaction in the rigorous design of embedded systems. Conventionally, a notebook is a sequence of cells alternating between (textual) code and prose to form a…

Software Engineering · Computer Science 2018-11-28 Spencer Park , Emil Sekerinski

POLEVAL provides a software toolbox for collaborative, persistent and reproducible analysis of XPS experiments. It allows to treat, analyse and visualise the results of an extended experimental campaign in a single python notebook in a…

Materials Science · Physics 2025-05-21 Robin Yoël Engel , Patrick Lömker

Computational notebooks have emerged as the platform of choice for data science and analytical workflows, enabling rapid iteration and exploration. By keeping intermediate program state in memory and segmenting units of execution into…

Software Engineering · Computer Science 2021-06-22 Stephen Macke , Hongpu Gong , Doris Jung-Lin Lee , Andrew Head , Doris Xin , Aditya Parameswaran

In this paper, we detail the integration of Python data analysis into a first-year physics laboratory course, a task accomplished without significant alterations to the existing course structure. We introduced tailored laboratory…

Physics Education · Physics 2024-05-28 Eugenio Tufino , Stefano Oss , Micol Alemani

Computational notebooks have gained widespread adoption among researchers from academia and industry as they support reproducible science. These notebooks allow users to combine code, text, and visualizations for easy sharing of experiments…

Computers and Society · Computer Science 2020-06-23 Sheeba Samuel , Birgitta König-Ries

Life sciences research depends heavily on open-source academic software, yet many tools remain underused due to practical barriers. These include installation requirements that hinder adoption and limited developer resources for software…

Diverse presentation formats play a pivotal role in effectively conveying code and analytical processes during data analysis. One increasingly popular format is tutorial videos, particularly those based on Jupyter notebooks, which offer an…

Human-Computer Interaction · Computer Science 2024-08-05 Yang Ouyang , Leixian Shen , Yun Wang , Quan Li

Jupyter notebooks are widely used for machine learning (ML) prototyping. Yet, few debugging tools are designed for ML code in notebooks, partly, due to the lack of benchmarks. We introduce JunoBench, the first benchmark dataset of…

Software Engineering · Computer Science 2026-05-01 Yiran Wang , José Antonio Hernández López , Ulf Nilsson , Dániel Varró

In recent years, Jupyter notebooks have grown in popularity in several domains of software engineering, such as data science, machine learning, and computer science education. Their popularity has to do with their rich features for…

Software Engineering · Computer Science 2022-04-01 Konstantin Grotov , Sergey Titov , Vladimir Sotnikov , Yaroslav Golubev , Timofey Bryksin

Code search is an important and frequent activity for developers using computational notebooks (e.g., Jupyter). The flexibility of notebooks brings challenges for effective code search, where classic search interfaces for traditional…

Human-Computer Interaction · Computer Science 2021-02-03 Xingjun Li , Yuanxin Wang , Hong Wang , Yang Wang , Jian Zhao

Jupyter Notebook is an interactive development environment commonly used for rapid experimentation of machine learning (ML) solutions. Describing the ML activities performed along code cells improves the readability and understanding of…

Software Engineering · Computer Science 2024-03-13 Miguel Perez , Selin Aydin , Horst Lichter
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