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The structure-thermodynamic stability relationship in vitreous silica is investigated using machine learning and a library of 24,157 inherent structures generated from melt-quenching and replica exchange molecular dynamics simulations. We…

Disordered Systems and Neural Networks · Physics 2021-01-20 Zheng Yu , Qitong Liu , Izabela Szlufarska , Bu Wang

Tetrahedral liquids such as water and silica-melt show unusual thermodynamic behavior such as a density maximum and an increase in specific-heat when cooled to low temperatures. There is a debate in the literature whether these phenomena…

Statistical Mechanics · Physics 2011-08-10 Itamar Procaccia , Ido Regev

We investigate a range of possible materials containing the supermolecular form of hydrogen comprising 13 hydrogen molecules arranged in an icosahedral arrangement. This supermolecule consists of freely rotating 12 hydrogen molecules in an…

Materials Science · Physics 2019-05-10 Graeme J. Ackland , Jack Binns , Ross Howie , Miguel Martinez-Canales

The stability mechanism of cuboctahedral clusters in nonstoichiometric uranium dioxide is investigated by first-principles LSDA+U method. Calculations reveal that the structural stability is inherited from U6O12 molecular cluster whereas…

Materials Science · Physics 2009-11-13 Hua Y. Geng , Ying Chen , Yasunori Kaneta , Motoyasu Kinoshita

Several experiments on molecular and metallic glasses have shown that the ability of vapor deposition to produce ultrastable glasses is correlated with their structural and thermodynamic properties. Here we investigate the vapor deposition…

Soft Condensed Matter · Physics 2024-07-26 Fabio Leoni , Fausto Martelli , John Russo

We investigated the structural and dynamical properties of a tetrahedrally coordinated crystalline ice from first principles based on density functional theory within the generalized gradient approximation with the projected augmented wave…

Materials Science · Physics 2007-05-23 W. A. Adeagbo , A. Zayak , P. Entel

We perform molecular dynamics simulations for a silica glass former model proposed by Coslovich and Pastore (CP) over a wide range of densities. The density variation can be mapped onto the change of the potential depth between Si and O…

Soft Condensed Matter · Physics 2016-07-08 Misaki Ozawa , Kang Kim , Kunimasa Miyazaki

The use of reduced models for investigating the self-assembly dynamics underlying protein shell formation in spherical viruses is described. The spontaneous self-assembly of these polyhedral, supramolecular structures, in which icosahedral…

Soft Condensed Matter · Physics 2009-11-10 D. C. Rapaport

By means of molecular dynamics simulations and the Voronoi tessellation, we study the influence of the history on the low temperature characteristics of soft sphere and silica glasses. The quench from the liquid is interrupted at an…

Soft Condensed Matter · Physics 2007-05-23 Philippe Jund , Remi Jullien

We use molecular dynamics with an embedded atom potential to study the behavior of palladium nanoclusters near the melting point in the microcanonical ensemble. We see transitions from both fcc and decahedral ground state structures to…

Other Condensed Matter · Physics 2007-05-23 D. Schebarchov , S. C. Hendy

We study the disordered, multi-spiral solutions of two-dimensional homogeneous oscillatory media for parameter values at which the single spiral/vortex solution is fully stable. In the framework of the complex Ginzburg-Landau (CGLE)…

Statistical Mechanics · Physics 2016-08-31 Carolina Brito , Igor S. Aranson , Hugues Chate

Recently, continuum elasticity theory has been applied to explain the shape transition of icosahedral viral capsids - single-protein-thick crystalline shells - from spherical to buckled/faceted as their radius increases through a critical…

Biological Physics · Physics 2009-11-11 T. T. Nguyen , R. F. Bruinsma , W. M. Gelbart

We present a neutron scattering analysis of the density and the static structure factor of confined methanol at various temperatures. Confinement is performed in the cylindrical pores of MCM-41 silicates with pore diameters D=24 angstrom…

Soft Condensed Matter · Physics 2009-11-10 Denis Morineau , Regis Guegan , Yongde Xia , Christiane Alba-Simionesco

We study crystallization in a model system for eicosane (C20) by means of molecular dynamics simulation and we identify the microscopic mechanisms of homogeneous crystal nucleation and growth. For the nucleation process, we observe that…

Soft Condensed Matter · Physics 2013-12-18 Muhammad Anwar , Francesco Turci , Tanja Schilling

We reveal the existence of systematic variations of isobaric fragility in different supercooled Lennard-Jones binary mixtures by performing molecular dynamics simulations. The connection between fragility and local structures in the bulk is…

Statistical Mechanics · Physics 2007-10-02 D. Coslovich , G. Pastore

Bifurcations in kinetic pathways decide the evolution of a system. An example is crystallization, in which the thermodynamically stable polymorph may not form due to kinetic hindrance. Here, we use confined self-assembly to investigate the…

Polyhedra and their arrangements have intrigued humankind since the ancient Greeks and are today important motifs in condensed matter, with application to many classes of liquids and solids. Yet, little is known about the thermodynamically…

Soft Condensed Matter · Physics 2012-01-25 Pablo F. Damasceno , Michael Engel , Sharon C. Glotzer

Motivated by old experiments on colloidal suspensions, we report molecular dynamics simulations of assemblies of hard spheres, addressing crystallization and glass formation. The simulations cover wide ranges of polydispersity s (standard…

Materials Science · Physics 2015-05-13 P. N. Pusey , E. Zaccarelli , C. Valeriani , E. Sanz , W. C. K. Poon , M. E. Cates

The liquid structure of a glass-forming binary alloy is studied using molecular dynamics simulations. The analysis combines common neighbour analysis with the geometrical approach of Frank and Kasper to establish that the supercooled liquid…

Soft Condensed Matter · Physics 2010-03-11 Ulf R. Pedersen , Thomas B. Schrøder , Jeppe C. Dyre , Peter Harrowell

Glasses remain an elusive and poorly understood state of matter. For example, it is not clear how we can design an efficient macroscopic glass former by tuning the properties of its microscopic building blocks. In this paper, we propose a…

Soft Condensed Matter · Physics 2019-02-06 Susana Marín Aguilar , Henricus H. Wensink , Giuseppe Foffi , Frank Smallenburg