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Inferring the structural properties of a protein from its amino acid sequence is a challenging yet important problem in biology. Structures are not known for the vast majority of protein sequences, but structure is critical for…

Machine Learning · Computer Science 2019-10-17 Tristan Bepler , Bonnie Berger

Deep neural networks usually benefit from unsupervised pre-training, e.g. auto-encoders. However, the classifier further needs supervised fine-tuning methods for good discrimination. Besides, due to the limits of full-connection, the…

Computer Vision and Pattern Recognition · Computer Science 2016-05-10 Hailin Shi , Xiangyu Zhu , Zhen Lei , Shengcai Liao , Stan Z. Li

Machine learning techniques have recently been adopted in various applications in medicine, biology, chemistry, and material engineering. An important task is to predict the properties of molecules, which serves as the main subroutine in…

Machine Learning · Computer Science 2019-11-12 Shengchao Liu , Mehmet Furkan Demirel , Yingyu Liang

Unsupervised node representation learning aims to obtain meaningful node embeddings without relying on node labels. To achieve this, graph convolution, which aggregates information from neighboring nodes, is commonly employed to encode node…

Machine Learning · Computer Science 2025-12-18 Sunwoo Kim , Soo Yong Lee , Kyungho Kim , Hyunjin Hwang , Jaemin Yoo , Kijung Shin

The mining and utilization of features directly affect the classification performance of models used in the classification and recognition of hyperspectral remote sensing images. Traditional models usually conduct feature mining from a…

Computer Vision and Pattern Recognition · Computer Science 2021-06-29 Yunsong Zhao , Yin Li , Zhihan Chen , Tianchong Qiu , Guojin Liu

Spiking neural networks (SNNs) equipped with latency coding and spike-timing dependent plasticity rules offer an alternative to solve the data and energy bottlenecks of standard computer vision approaches: they can learn visual features…

Computer Vision and Pattern Recognition · Computer Science 2020-12-22 Pierre Falez , Pierre Tirilly , Ioan Marius Bilasco , Philippe Devienne , Pierre Boulet

Traditionally, training neural networks to perform semantic segmentation required expensive human-made annotations. But more recently, advances in the field of unsupervised learning have made significant progress on this issue and towards…

Computer Vision and Pattern Recognition · Computer Science 2024-03-27 Leon Sick , Dominik Engel , Pedro Hermosilla , Timo Ropinski

Deep learning has made significant progress in protein structure prediction, advancing the development of computational biology. However, despite the high accuracy achieved in predicting single-chain structures, a significant number of…

Biomolecules · Quantitative Biology 2024-03-08 Zhaoqun Li , Jingcheng Yu , Qiwei Ye

The trade-off between predictive accuracy and data availability makes it difficult to predict protein--protein binding affinity accurately. The lack of experimentally resolved protein structures limits the performance of structure-based…

Machine Learning · Computer Science 2026-01-08 Wajid Arshad Abbasi , Syed Ali Abbas , Maryum Bibi , Saiqa Andleeb , Muhammad Naveed Akhtar

A visual system has to learn both which features to extract from images and how to group locations into (proto-)objects. Those two aspects are usually dealt with separately, although predictability is discussed as a cue for both. To…

Computer Vision and Pattern Recognition · Computer Science 2022-05-31 Heiko H. Schütt , Wei Ji Ma

Disentangling coherent and incoherent effects in the photoemission spectra of strongly correlated materials is generally a challenging problem due to the involvement of numerous parameters. In this study, we employ machine learning…

Superconductivity · Physics 2024-12-17 K. H. Bohachov , A. A. Kordyuk

Spectral-spatial classification of hyperspectral images has been the subject of many studies in recent years. In the presence of only very few labeled pixels, this task becomes challenging. In this paper we address the following two…

Computer Vision and Pattern Recognition · Computer Science 2018-07-24 Jacopo Acquarelli , Elena Marchiori , Lutgarde M. C. Buydens , Thanh Tran , Twan van Laarhoven

Discrete structure rules for validating molecular structures are usually limited to fulfillment of the octet rule or similar simple deterministic heuristics. We propose a model, inspired by language modeling from natural language…

We propose a systematic methodology to identify the topological phase transition through a self-supervised machine learning model, which is trained to correlate system parameters to the non-local observables in time-of-flight experiments of…

Quantum Gases · Physics 2021-09-01 Chi-Ting Ho , Daw-Wei Wang

The search for new high-performance organic semiconducting molecules is challenging due to the vastness of the chemical space, machine learning methods, particularly deep learning models like graph neural networks (GNNs), have shown…

Chemical Physics · Physics 2021-12-06 Zaixi Zhang , Qi Liu , Shengyu Zhang , Chang-Yu Hsieh , Liang Shi , Chee-Kong Lee

Ultrafast diffraction imaging is a powerful tool to retrieve the geometric structure of gas-phase molecules with combined picometre spatial and attosecond temporal resolution. However, structural retrieval becomes progressively difficult…

Chemical Physics · Physics 2021-10-13 Xinyao Liu , Kasra Amini , Aurelien Sanchez , Blanca Belsa , Tobias Steinle , Jens Biegert

The rational design of single molecule electrical components requires a deep and predictive understanding of structure-function relationships. Here we explore the relationship between chemical substituents and the conductance of…

Scanning probe experiments such as scanning tunneling microscopy (STM) and atomic force microscopy (AFM) on strongly correlated electronic systems often reveal complex pattern formation on multiple length scales. By studying the universal…

Strongly Correlated Electrons · Physics 2019-04-03 L. Burzawa , Shuo Liu , E. W. Carlson

In apparel recognition, specialized models (e.g. models trained for a particular vertical like dresses) can significantly outperform general models (i.e. models that cover a wide range of verticals). Therefore, deep neural network models…

Computer Vision and Pattern Recognition · Computer Science 2017-08-16 Yang Song , Yuan Li , Bo Wu , Chao-Yeh Chen , Xiao Zhang , Hartwig Adam

Joint Detection and Embedding (JDE) trackers have demonstrated excellent performance in Multi-Object Tracking (MOT) tasks by incorporating the extraction of appearance features as auxiliary tasks through embedding Re-Identification task…

Computer Vision and Pattern Recognition · Computer Science 2024-08-07 Yunfei Zhang , Chao Liang , Jin Gao , Zhipeng Zhang , Weiming Hu , Stephen Maybank , Xue Zhou , Liang Li