Related papers: The Simplex Tree: an Efficient Data Structure for …
The Simplex Tree (ST) is a recently introduced data structure that can represent abstract simplicial complexes of any dimension and allows efficient implementation of a large range of basic operations on simplicial complexes. In this paper,…
We propose a new linear-size data structure which provides a fast access to all palindromic substrings of a string or a set of strings. This structure inherits some ideas from the construction of both the suffix trie and suffix tree. Using…
A simplicial complex is a generalization of a graph: a collection of n-ary relationships (instead of binary as the edges of a graph), named simplices. In this paper, we develop a new tool to study the structure of simplicial complexes: we…
A filtration over a simplicial complex $K$ is an ordering of the simplices of $K$ such that all prefixes in the ordering are subcomplexes of $K$. Filtrations are at the core of Persistent Homology, a major tool in Topological Data Analysis.…
A suffix tree is a data structure used mainly for pattern matching. It is known that the space complexity of simple suffix trees is quadratic in the length of the string. By a slight modification of the simple suffix trees one gets the…
Succinct data structures give space-efficient representations of large amounts of data without sacrificing performance. They rely one cleverly designed data representations and algorithms. We present here the formalization in Coq/SSReflect…
We provide a short introduction to the field of topological data analysis and discuss its possible relevance for the study of complex systems. Topological data analysis provides a set of tools to characterise the shape of data, in terms of…
In \cite{Spi}, we developed a category of databases in which the schema of a database is represented as a simplicial set. Each simplex corresponds to a table in the database. There, our main concern was to find a categorical formulation of…
We present a new model which represents data as a mixture of simplices. Simplices are geometric structures that generalize triangles. We give a simple geometric understanding that allows us to learn a simplicial structure efficiently. Our…
Suffix trees are one of the most versatile data structures in stringology, with many applications in bioinformatics. Their main drawback is their size, which can be tens of times larger than the input sequence. Much effort has been put into…
Simplicial complexes are generalized network structures able to encode interactions occurring between more than two nodes. Simplicial complexes describe a large variety of complex interacting systems ranging from brain networks, to social…
We introduce the Stellar decomposition, a model for efficient topological data structures over a broad range of simplicial and cell complexes. A Stellar decomposition of a complex is a collection of regions indexing the complex's vertices…
The tree complex is a simplicial complex defined in recent work of Belk, Lanier, Margalit, and Winarski with natural applications to mapping class groups and complex dynamics. In this article, we connect this setting with the study of…
A central problem in topological data analysis is that of computing the homology of a given simplicial complex. Said complexes can have arbitrary large number of simplices, as can happen, for example, if the space is the Rips-Vietoris or…
Efficiently word storing and searching is an important task in computer science. An application space complexity, time complexity, and overall performance depend on this string data. Many word searching data structures and algorithms exist…
In the field of mathematics, a purely combinatorial equivalent to a simplicial complex, or more generally, a down-set, is an abstract structure known as a family of sets. This family is closed under the operation of taking subsets, meaning…
We consider the problem of representing multidimensional data where the domain of each dimension is organized hierarchically, and the queries require summary information at a different node in the hierarchy of each dimension. This is the…
Simplicial complexes form an important class of topological spaces that are frequently used in many application areas such as computer-aided design, computer graphics, and simulation. Representation learning on graphs, which are just 1-d…
This paper introduces a method to extract a hierarchical tree representation from 3D unorganized polygonal data. The proposed approach first extracts a graph representation of the surface, which serves as the foundation for structural…
Suffix trees are a fundamental data structure in stringology, but their space usage, though linear, is an important problem for its applications. We design and implement a new compressed suffix tree targeted to highly repetitive texts, such…