Related papers: Codes over Trees
The distribution of distances in the star graph $ST_n$, ($1<n\in\Z$), is established, and subsequently a threaded binary tree is obtained that realizes an orientation of $ST_n$ whose levels are given by the distances to the identity…
It is reasonable to expect the theory of quantum codes to be simplified in the case of codes of minimum distance 2; thus, it makes sense to examine such codes in the hopes that techniques that prove effective there will generalize. With…
A geometric graph is a combinatorial graph, endowed with a geometry that is inherited from its embedding in a Euclidean space. Formulation of a meaningful measure of (dis-)similarity in both the combinatorial and geometric structures of two…
The problem of realizing finite metric spaces in terms of weighted graphs has many applications. For example, the mathematical and computational properties of metrics that can be realized by trees have been well-studied and such research…
In this paper, we lay the groundwork on the comparison of phylogenetic networks based on edge contractions and expansions as edit operations, as originally proposed by Robinson and Foulds to compare trees. We prove that these operations…
Maximum distance profile codes are characterized by the property that two trajectories which start at the same state and proceed to a different state will have the maximum possible distance from each other relative to any other…
The Hausdorff distance is a relatively new measure of similarity of graphs. The notion of the Hausdorff distance considers a special kind of a common subgraph of the compared graphs and depends on the structural properties outside of the…
We design a heuristic method, a genetic algorithm, for the computation of an upper bound of the minimum distance of a linear code over a finite field. By the use of the row reduced echelon form, we obtain a permutation encoding of the…
Consider the continuum of points on the edges of a network, i.e., a connected, undirected graph with positive edge weights. We measure the distance between these points in terms of the weighted shortest path distance, called the network…
Recent years have witnessed a surge of biological interest in the minimum spanning tree (MST) problem for its relevance to automatic model construction using the distances between data points. Despite the increasing use of MST algorithms…
We consider three different schemes for signal routing on a tree. The vertices of the tree represent transceivers that can transmit and receive signals, and are equipped with i.i.d. weights representing the strength of the transceivers. The…
This paper addresses the problem of finding a representation of a subtree distance, which is an extension of the tree metric. We show that a minimal representation is uniquely determined by a given subtree distance, and give a linear time…
Cubicity of a graph $G$ is the smallest dimension $d$, for which $G$ is a unit disc graph in ${\mathbb{R}}^d$, under the $l^\infty$ metric, i.e. $G$ can be represented as an intersection graph of $d$-dimensional (axis-parallel) unit…
Short spanning trees subject to additional constraints are important building blocks in various approximation algorithms. Especially in the context of the Traveling Salesman Problem (TSP), new techniques for finding spanning trees with…
We study the inference of network archaeology in growing random geometric graphs. We consider the root finding problem for a random nearest neighbor tree in dimension $d \in \mathbb{N}$, generated by sequentially embedding vertices…
Tree comparison metrics have proven to be an invaluable aide in the reconstruction and analysis of phylogenetic (evolutionary) trees. The path-length distance between trees is a particularly attractive measure as it reflects differences in…
In a graph, a spanning tree is said to be a tree t-spanner of the graph if the distance between any two vertices in is at most times their distance in . The tree t-spanner has many applications in networks and distributed environments. In…
A spread code is a set of vector spaces of a fixed dimension over a finite field Fq with certain properties used for random network coding. It can be constructed in different ways which lead to different decoding algorithms. In this work we…
Computing the similarity between two data points plays a vital role in many machine learning algorithms. Metric learning has the aim of learning a good metric automatically from data. Most existing studies on metric learning for…
An identifying code is a subset of vertices of a graph such that each vertex is uniquely determined by its neighbourhood within the identifying code. If $\M(G)$ denotes the minimum size of an identifying code of a graph $G$, it was…