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Protein language models (pLMs) pre-trained on vast protein sequence databases excel at various downstream tasks but often lack the structural knowledge essential for some biological applications. To address this, we introduce a method to…

Long-range sequence modeling is a crucial aspect of natural language processing and time series analysis. However, traditional models like Recurrent Neural Networks (RNNs) and Transformers suffer from computational and memory…

Artificial Intelligence · Computer Science 2025-01-15 Mohamed A. Taha

In this paper we propose the Structured Deep Neural Network (Structured DNN) as a structured and deep learning algorithm, learning to find the best structured object (such as a label sequence) given a structured input (such as a vector…

Machine Learning · Computer Science 2015-06-04 Yi-Hsiu Liao , Hung-Yi Lee , Lin-shan Lee

We introduce a framework for automatically choosing data structures to support efficient computation of analytical workloads. Our contributions are twofold. First, we introduce a novel low-level intermediate language that can express the…

Databases · Computer Science 2021-12-28 Amir Shaikhha , Marios Kelepeshis , Mahdi Ghorbani

Understanding the internal functional organization of Large Language Models (LLMs) is crucial for improving their trustworthiness and performance. However, how LLMs organize different functions into modules remains highly unexplored. To…

Machine Learning · Computer Science 2026-03-19 Yanke Yu , Jin Li , Ying Sun , Ping Li , Zhefeng Wang , Yi Zheng

Recurrent neural networks (RNNs) have led to breakthroughs in natural language processing and speech recognition, wherein hundreds of millions of people use such tools on a daily basis through smartphones, email servers and other avenues.…

Disordered Systems and Neural Networks · Physics 2020-12-02 Sun-Ting Tsai , En-Jui Kuo , Pratyush Tiwary

Recent work has shown that language models (LMs) have strong multi-step (i.e., procedural) reasoning capabilities. However, it is unclear whether LMs perform these tasks by cheating with answers memorized from pretraining corpus, or, via a…

Computation and Language · Computer Science 2023-10-24 Yifan Hou , Jiaoda Li , Yu Fei , Alessandro Stolfo , Wangchunshu Zhou , Guangtao Zeng , Antoine Bosselut , Mrinmaya Sachan

We investigate regression for variable length sequential data containing missing samples and introduce a novel tree architecture based on the Long Short-Term Memory (LSTM) networks. In our architecture, we employ a variable number of LSTM…

Machine Learning · Computer Science 2020-05-26 S. Onur Sahin , Suleyman S. Kozat

State-of-the-art named entity recognition systems rely heavily on hand-crafted features and domain-specific knowledge in order to learn effectively from the small, supervised training corpora that are available. In this paper, we introduce…

Computation and Language · Computer Science 2016-04-08 Guillaume Lample , Miguel Ballesteros , Sandeep Subramanian , Kazuya Kawakami , Chris Dyer

Providing textual concept-based explanations for neurons in deep neural networks (DNNs) is of importance in understanding how a DNN model works. Prior works have associated concepts with neurons based on examples of concepts or a…

Computer Vision and Pattern Recognition · Computer Science 2024-06-14 Nhat Hoang-Xuan , Minh Vu , My T. Thai

Predictive Business Process Monitoring (PBPM) aims to forecast future outcomes of ongoing business processes. However, existing methods often lack flexibility to handle real-world challenges such as simultaneous events, class imbalance, and…

Machine Learning · Computer Science 2025-08-06 Fang Wang , Paolo Ceravolo , Ernesto Damiani

Large language model (LLM)-based systems are becoming increasingly popular for solving tasks by constructing executable workflows that interleave LLM calls, information retrieval, tool use, code execution, memory updates, and verification.…

Artificial Intelligence · Computer Science 2026-03-25 Ling Yue , Kushal Raj Bhandari , Ching-Yun Ko , Dhaval Patel , Shuxin Lin , Nianjun Zhou , Jianxi Gao , Pin-Yu Chen , Shaowu Pan

Structured pruning is one of the representative techniques for compressing large language models (LLMs) to reduce GPU memory consumption and accelerate inference speed. It offers significant practical value in improving the efficiency of…

Computation and Language · Computer Science 2025-08-08 Yiheng Liu , Junhao Ning , Sichen Xia , Xiaohui Gao , Ning Qiang , Bao Ge , Junwei Han , Xintao Hu

Agentic discovery has shown that LLM-driven search can find novel algorithms, designs, and code under benchmark conditions. Translating the paradigm to multi-system data backends surfaces a harder problem: the search space is heterogeneous,…

Artificial Intelligence · Computer Science 2026-05-27 Shanshan Ye , Duo Lu

Long Short-Term Memory (LSTM) is a recurrent neural network (RNN) architecture that has been designed to address the vanishing and exploding gradient problems of conventional RNNs. Unlike feedforward neural networks, RNNs have cyclic…

Neural and Evolutionary Computing · Computer Science 2014-02-06 Haşim Sak , Andrew Senior , Françoise Beaufays

In the process of digital transformation, enterprises are faced with problems such as insufficient semantic understanding of unstructured data and lack of intelligent decision-making basis in driving mechanisms. This study proposes a method…

Artificial Intelligence · Computer Science 2026-01-09 Huayi Liu

Log-Structured Merge (LSM) Trees provide a tiered data storage and retrieval paradigm that is attractive for write-optimized data systems. Maintaining an efficient buffer in memory and deferring updates past their initial write-time, the…

Databases · Computer Science 2018-09-11 Aron Szanto

Large Language Models (LLMs) have advanced Automated Heuristic Design (AHD) in combinatorial optimization (CO) in the past few years. However, existing discovery pipelines often require extensive manual trial-and-error or reliance on domain…

Neural and Evolutionary Computing · Computer Science 2026-02-19 Mingxin Yu , Ruixiao Yang , Chuchu Fan

Fine-tuning Large Language Models (LLMs) is now a common approach for text classification in a wide range of applications. When labeled documents are scarce, active learning helps save annotation efforts but requires retraining of massive…

Machine Learning · Computer Science 2024-02-27 Artem Vysogorets , Achintya Gopal

Text simplification (TS) aims to reduce the lexical and structural complexity of a text, while still retaining the semantic meaning. Current automatic TS techniques are limited to either lexical-level applications or manually defining a…

Computation and Language · Computer Science 2016-09-14 Tong Wang , Ping Chen , Kevin Amaral , Jipeng Qiang
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