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Phylogenetic networks are used to study evolutionary relationships between species in biology. Such networks are often categorized into classes by their topological features, which stem from both biological and computational motivations. We…

Combinatorics · Mathematics 2020-04-17 Leo van Iersel , Remie Janssen , Mark Jones , Yukihiro Murakami , Norbert Zeh

Networks of coupled phase oscillators are one of the most studied dynamical systems with numerous applications in physics, chemistry, biology, and engineering. Their behaviour is often characterized by the emergence of various partially…

Pattern Formation and Solitons · Physics 2026-02-27 Oleh E. Omel'chenko

We study the problem of computing approximate minimum edge cuts by distributed algorithms. We use a standard synchronous message passing model where in each round, $O(\log n)$ bits can be transmitted over each edge (a.k.a. the CONGEST…

Data Structures and Algorithms · Computer Science 2013-11-21 Mohsen Ghaffari , Fabian Kuhn

This paper considers a network of stochastic evidence accumulators, each represented by a drift-diffusion model accruing evidence towards a decision in continuous time by observing a noisy signal and by exchanging information with other…

Systems and Control · Computer Science 2012-10-17 Ioannis Poulakakis , Luca Scardovi , Naomi Ehrich Leonard

In decentralized optimization, nodes cooperate to minimize an overall objective function that is the sum (or average) of per-node private objective functions. Algorithms interleave local computations with communication among all or a subset…

Optimization and Control · Mathematics 2018-01-16 Angelia Nedić , Alex Olshevsky , Michael G. Rabbat

We study the complexity of the following cell connection and separation problems in segment arrangements. Given a set of straight-line segments in the plane and two points $a$ and $b$ in different cells of the induced arrangement: (i)…

Computational Geometry · Computer Science 2011-06-21 Helmut Alt , Sergio Cabello , Panos Giannopoulos , Christian Knauer

Reconstructing the states of the nodes of a dynamical network is a problem of fundamental importance in the study of neuronal and genetic networks. An underlying related problem is that of observability, i.e., identifying the conditions…

Pattern Formation and Solitons · Physics 2017-03-31 Afroza Shirin , Dionicio F. Rios , Francesco Sorrentino

Analogous to biological sequence comparison, comparing cellular networks is an important problem that could provide insight into biological understanding and therapeutics. For technical reasons, comparing large networks is computationally…

Molecular Networks · Quantitative Biology 2009-01-30 Natasa Przulj

Symmetries are an essential feature of complex networks as they regulate how the graph collective dynamics organizes into clustered states. We here show how to control network symmetries, and how to enforce patterned states of…

Physics and Society · Physics 2020-11-24 L. V. Gambuzza , M. Frasca , F. Sorrentino , L. M. Pecora , S. Boccaletti

Identifying the connected components of a graph, apart from being a fundamental problem with countless applications, is a key primitive for many other algorithms. In this paper, we consider this problem in parallel settings. Particularly,…

Data Structures and Algorithms · Computer Science 2020-03-13 Soheil Behnezhad , Laxman Dhulipala , Hossein Esfandiari , Jakub Łącki , Vahab Mirrokni

Let $T$ be a tree with $t$ edges. We show that the number of isomorphic (labeled) copies of $T$ in a graph $G = (V,E)$ of minimum degree at least $t$ is at least \[2|E| \prod_{v \in V} (d(v) - t + 1)^{\frac{(t-1)d(v)}{2|E|}}.\]…

Combinatorics · Mathematics 2015-11-24 Dhruv Mubayi , Jacques Verstraete

Networks are fundamental building blocks for representing data, and computations. Remarkable progress in learning in structurally defined (shallow or deep) networks has recently been achieved. Here we introduce evolutionary exploratory…

Neural and Evolutionary Computing · Computer Science 2019-11-05 Rise Ooi , Chao-Han Huck Yang , Pin-Yu Chen , Vìctor Eguìluz , Narsis Kiani , Hector Zenil , David Gomez-Cabrero , Jesper Tegnèr

The complete classification of (3,3)-nets and of (3,4)-nets with only double and triple points is given. Up to lattice isomorphism, there are exactly 3 effective possibilities in each case, and some of these provide new examples of…

Algebraic Geometry · Mathematics 2013-07-26 Alexandru Dimca , Denis Ibadula , Daniela Anca Macinic

Our work is motivated by and illustrated with application of association networks in computational biology, specifically in the context of gene/protein regulatory networks. Association networks represent systems of interacting elements,…

Applications · Statistics 2012-05-01 Natallia Katenka , Eric D. Kolaczyk

Multilayer network analysis has become a vital tool for understanding different relationships and their interactions in a complex system, where each layer in a multilayer network depicts the topological structure of a group of nodes…

Social and Information Networks · Computer Science 2017-09-18 Weiyi Liu , Pin-Yu Chen , Sailung Yeung , Toyotaro Suzumura , Lingli Chen

Many complex biological, social, and economical networks show topologies drastically differing from random graphs. But, what is a complex network, i.e.\ how can one quantify the complexity of a graph? Here the Offdiagonal Complexity (OdC),…

Quantitative Methods · Quantitative Biology 2007-12-28 Jens Christian Claussen

While much of network design focuses mostly on cost (number or weight of edges), node degrees have also played an important role. They have traditionally either appeared as an objective, to minimize the maximum degree (e.g., the Minimum…

Data Structures and Algorithms · Computer Science 2023-02-23 Michael Dinitz , Guy Kortsarz , Shi Li

Many mathematical models of interacting agents assume that individual interactions scale down in proportion to the network size, ensuring that the combined input received from the network does not diverge. In theoretical neuroscience,…

Analysis of PDEs · Mathematics 2025-11-10 Cristobal Quininao , Jonathan Touboul

Communities are subsets of a network that are densely connected inside and share only few connections to the rest of the network. The aim of this research is the development and evaluation of an efficient algorithm for detection of…

Social and Information Networks · Computer Science 2014-09-29 Jan Dreier

The topology of a wireless multi-hop network can be controlled by varying the transmission power at each node. In this paper, we give a detailed analysis of a cone-based distributed topology control algorithm. This algorithm, introduced in…

Networking and Internet Architecture · Computer Science 2007-05-23 Erran L. Li , Joseph Y. Halpern , Paramvir Bahl , Yi-Min Wang , Roger Wattenhofer
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