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This study presents a comparison of quantitative MRI methods based on an efficiency metric that quantifies their intrinsic ability to extract information about tissue parameters. Under a regime of unbiased parameter estimates, an intrinsic…

Magnetic resonance (MR) fingerprinting is a new quantitative imaging paradigm, which simultaneously acquires multiple MR tissue parameter maps in a single experiment. In this paper, we present an estimation-theoretic framework to perform…

Signal Processing · Electrical Eng. & Systems 2018-10-03 Bo Zhao , Justin P. Haldar , Congyu Liao , Dan Ma , Yun Jiang , Mark A. Griswold , Kawin Setsompop , Lawrence L. Wald

We propose an unsupervised convolutional neural network (CNN) for relaxation parameter estimation. This network incorporates signal relaxation and Bloch simulations while taking advantage of residual learning and spatial relations across…

Image and Video Processing · Electrical Eng. & Systems 2021-12-14 Mengze Gao , Huihui Ye , Tae Hyung Kim , Zijing Zhang , Seohee So , Berkin Bilgic

Magnetic Resonance Fingerprinting (MRF) is a method to extract quantitative tissue properties such as T1 and T2 relaxation rates from arbitrary pulse sequences using conventional magnetic resonance imaging hardware. MRF pulse sequences have…

High-resolution (HR) quantitative MRI (qMRI) relaxometry provides objective tissue characterization but remains clinically underutilized due to lengthy acquisition times. We propose a physics-informed, self-supervised framework for qMRI…

Computer Vision and Pattern Recognition · Computer Science 2025-12-22 Alireza Samadifardheris , Dirk H. J. Poot , Florian Wiesinger , Stefan Klein , Juan A. Hernandez-Tamames

In this paper, we propose the use of Recurrent Inference Machines (RIMs) to perform T1 and T2 mapping. The RIM is a neural network framework that learns an iterative inference process based on the signal model, similar to conventional…

Image and Video Processing · Electrical Eng. & Systems 2021-06-15 E. R. Sabidussi , S. Klein , M. W. A. Caan , S. Bazrafkan , A. J. den Dekker , J. Sijbers , W. J. Niessen , D. H. J. Poot

Cardiac T1 mapping provides critical quantitative insights into myocardial tissue composition, enabling the assessment of pathologies such as fibrosis, inflammation, and edema. However, the inherently dynamic nature of the heart imposes…

Image and Video Processing · Electrical Eng. & Systems 2025-12-09 Tamir Shor , Moti Freiman , Chaim Baskin , Alex Bronstein

Purpose: In many clinical MRI scenarios, existing imaging information can be used to significantly shorten acquisition time or to improve Signal to Noise Ratio (SNR). In this paper the authors present a framework for fast MRI by exploiting…

Medical Physics · Physics 2017-08-28 Lior Weizman , Yonina C. Eldar , Dafna Ben-Basaht

Magnetic Resonance Imaging (MRI) is one of the most dynamic and safe imaging techniques available for clinical applications. However, the rather slow speed of MRI acquisitions limits the patient throughput and potential indi cations.…

Computer Vision and Pattern Recognition · Computer Science 2018-11-14 Risheng Liu , Yuxi Zhang , Shichao Cheng , Xin Fan , Zhongxuan Luo

Purpose: Recent work highlights the breadth of reported spin-lattice relaxation rates ($R_1$) for individual tissues. One potential source of variation is the protocol used to determine $R_1$. The methodological dependence of R1 and…

Medical Physics · Physics 2019-10-01 Christopher Jenkins , Ioannis Papadopoulos , S. M. Shermer

Quantitative magnetic resonance imaging (qMRI) is increasingly investigated for use in a variety of clinical tasks from diagnosis, through staging, to treatment monitoring. However, experiment design in qMRI, the identification of the…

Computer Vision and Pattern Recognition · Computer Science 2024-08-23 Tianshu Zheng , Zican Wang , Timothy Bray , Daniel C. Alexander , Dan Wu , Hui Zhang

Recovering the T2 distribution from multi-echo T2 magnetic resonance (MR) signals is challenging but has high potential as it provides biomarkers characterizing the tissue micro-structure, such as the myelin water fraction (MWF). In this…

Purpose: This study demonstrated an MR signal multitask learning method for 3D simultaneous segmentation and relaxometry of human brain tissues. Materials and Methods: A 3D inversion-prepared balanced steady-state free precession sequence…

Medical Physics · Physics 2019-12-02 Peng Cao , Jing Liu , Shuyu Tang , Andrew Leynes , Janine M. Lupo , Duan Xu , Peder E. Z. Larson

Purpose: The analysis of optimized spin ensemble trajectories for relaxometry in the hybrid state. Methods: First, we constructed visual representations to elucidate the differential equation that governs spin dynamics in hybrid state.…

Medical Physics · Physics 2019-06-26 Jakob Assländer , Riccardo Lattanzi , Daniel K Sodickson , Martijn A Cloos

Quantitative magnetic resonance (MR) T1\r{ho} mapping is a promising approach for characterizing intrinsic tissue-dependent information. However, long scan time significantly hinders its widespread applications. Recently, low-rank tensor…

Image and Video Processing · Electrical Eng. & Systems 2023-01-31 Yuanyuan Liu , Dong Liang , Zhuo-Xu Cui , Yuxin Yang , Chentao Cao , Qingyong Zhu , Jing Cheng , Caiyun Shi , Haifeng Wang , Yanjie Zhu

Purpose: To develop neural network (NN)-based quantitative MRI parameter estimators with minimal bias and a variance close to the Cram\'er-Rao bound. Theory and Methods: We generalize the mean squared error loss to control the bias and…

Medical Physics · Physics 2024-05-07 Andrew Mao , Sebastian Flassbeck , Jakob Assländer

In nonlinear deterministic parameter estimation, the maximum likelihood estimator (MLE) is unable to attain the Cramer-Rao lower bound at low and medium signal-to-noise ratios (SNR) due the threshold and ambiguity phenomena. In order to…

Applications · Statistics 2015-06-19 Achraf Mallat , Sinan Gezici , Davide Dardari , Christophe Craeye , Luc Vandendorpe

Purpose: Investigation of the feasibility of the R2* mapping techniques by using latest theoretical models corrected for confounding factors and optimized for signal to noise ratio. Theory and Methods: The improvement of the performance of…

Medical Physics · Physics 2016-08-10 G. Siracusano , A. La Corte , C. Milazzo , G. P. Anastasi , G. Finocchio , M. Gaeta

Task-adapted compressed sensing magnetic resonance imaging (CS-MRI) is emerging to address the specific demands of downstream clinical tasks with significantly fewer k-space measurements than required by Nyquist sampling. However, existing…

Machine Learning · Computer Science 2026-04-15 Xinyu Peng , Ziyang Zheng , Wenrui Dai , Duoduo Xue , Shaohui Li , Chenglin Li , Junni Zou , Hongkai Xiong

Accurate thalamic nuclei segmentation is crucial for understanding neurological diseases, brain functions, and guiding clinical interventions. However, the optimal inputs for segmentation remain unclear. This study systematically evaluates…

Image and Video Processing · Electrical Eng. & Systems 2025-08-19 Anqi Feng , Zhangxing Bian , Samuel W. Remedios , Savannah P. Hays , Blake E. Dewey , Jiachen Zhuo , Dan Benjamini , Jerry L. Prince
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