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We present an implementation of interval analysis and mixed monotone interval reachability analysis as function transforms in Python, fully composable with the computational framework JAX. The resulting toolbox inherits several key features…

Systems and Control · Electrical Eng. & Systems 2024-05-02 Akash Harapanahalli , Saber Jafarpour , Samuel Coogan

{\mu}Manager, an open-source microscopy acquisition software, has been an essential tool for many microscopy experiments over the past 15 years, but is not easy to use for experiments in which image acquisition and analysis are closely…

Quantitative Methods · Quantitative Biology 2024-02-12 Henry Pinkard , Nico Stuurman , Laura Waller

ControlBurn is a Python package to construct feature-sparse tree ensembles that support nonlinear feature selection and interpretable machine learning. The algorithms in this package first build large tree ensembles that prioritize basis…

Machine Learning · Statistics 2022-07-11 Brian Liu , Miaolan Xie , Haoyue Yang , Madeleine Udell

This work introduces ParamRF: a Python library for efficient, parametric modelling of radio frequency (RF) circuits. Built on top of the next-generation computational library JAX, as well as the object-oriented wrapper Equinox, the…

Other Computer Science · Computer Science 2026-05-22 Gary V. C. Allen , Dirk I. L. de Villiers

We introduce Atomistic learned potentials in JAX (apax), a flexible and efficient open source software package for training and inference of machine-learned interatomic potentials. Built on the JAX framework, apax supports GPU acceleration…

Chemical Physics · Physics 2025-11-19 Moritz René Schäfer , Nico Segreto , Fabian Zills , Christian Holm , Johannes Kästner

We developed a jitted compiler for training Artificial Neural Networks using C++, LLVM and Cuda. It features object-oriented characteristics, strong typing, parallel workers for data pre-processing, pythonic syntax for expressions, PyTorch…

Linear models are a core component for statistical software that analyzes treatment effects. They are used in experimentation platforms where analysis is automated, as well as scientific studies where analysis is done locally and manually.…

Computation · Statistics 2019-10-15 Jeffrey Wong , Randall Lewis , Matthew Wardrop

The field of neuromorphic computing is in a period of active exploration. While many tools have been developed to simulate neuronal dynamics or convert deep networks to spiking models, general software libraries for learning rules remain…

Machine Learning · Computer Science 2021-08-17 Zixuan Zhao , Nathan Wycoff , Neil Getty , Rick Stevens , Fangfang Xia

Jupyter Notebooks are an enormously popular tool for creating and narrating computational research projects. They also have enormous potential for creating reproducible scientific research artifacts. Capturing the complete state of a…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-10-18 Dimuthu Wannipurage , Suresh Marru , Marlon Pierce

We present Memory Augmented Policy Optimization (MAPO), a simple and novel way to leverage a memory buffer of promising trajectories to reduce the variance of policy gradient estimate. MAPO is applicable to deterministic environments with…

Machine Learning · Computer Science 2019-01-15 Chen Liang , Mohammad Norouzi , Jonathan Berant , Quoc Le , Ni Lao

jinns is an open-source Python library for physics-informed neural networks, built to tackle both forward and inverse problems, as well as meta-model learning. Rooted in the JAX ecosystem, it provides a versatile framework for efficiently…

Machine Learning · Statistics 2024-12-19 Hugo Gangloff , Nicolas Jouvin

This paper introduces the practicalities and benefits of using SimPy, a discrete event simulation (DES) module written in Python, for modeling and simulating complex systems. Through a step-by-step exploration of the classical Dining…

Mathematical Software · Computer Science 2024-05-06 Dmitry Zinoviev

Particle physics theories, such as those which explain neutrino flavor mixing, arise from a vast landscape of model-building possibilities. A model's construction typically relies on the intuition of theorists. It also requires considerable…

High Energy Physics - Phenomenology · Physics 2026-05-08 Jason Benjamin Baretz , Max Fieg , Vijay Ganesh , Aishik Ghosh , V. Knapp-Perez , Jake Rudolph , Daniel Whiteson

Numba is a game-changing compiler for high-performance computing with Python. It produces machine code that runs outside of the single-threaded Python interpreter and that fully utilizes the resources of modern CPUs. This means support for…

Software Engineering · Computer Science 2023-05-17 Srinath Kailasa , Tingyu Wang , Lorena A. Barba , Timo Betcke

We present the design of the simulation package Pluto, aimed at the study of hadronic interactions at SIS and FAIR energies. Its main mission is to offer a modular framework with an object-oriented structure, thereby making additions such…

Nuclear Experiment · Physics 2010-05-25 I. Froehlich , T. Galatyuk , R. Holzmann , J. Markert , B. Ramstein , P. Salabura , J. Stroth

Probabilistic programming (PP) allows flexible specification of Bayesian statistical models in code. PyMC3 is a new, open-source PP framework with an intutive and readable, yet powerful, syntax that is close to the natural syntax…

Computation · Statistics 2015-07-30 John Salvatier , Thomas Wiecki , Christopher Fonnesbeck

We present a Julia package, DisjunctiveProgramming.jl, that extends the functionality in JuMP.jl to allow modeling problems via logical propositions and disjunctive constraints. Such models can then be reformulated into Mixed-Integer…

Logic in Computer Science · Computer Science 2023-04-21 Hector D. Perez , Shivank Joshi , Ignacio E. Grossmann

We introduce Diffuse, a system that dynamically performs task and kernel fusion in distributed, task-based runtime systems. The key component of Diffuse is an intermediate representation of distributed computation that enables the necessary…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-12-17 Rohan Yadav , Shiv Sundram , Wonchan Lee , Michael Garland , Michael Bauer , Alex Aiken , Fredrik Kjolstad

This paper introduces $\textit{arfpy}$, a python implementation of Adversarial Random Forests (ARF) (Watson et al., 2023), which is a lightweight procedure for synthesizing new data that resembles some given data. The software…

Machine Learning · Statistics 2023-11-14 Kristin Blesch , Marvin N. Wright

Analog quantum simulation leverages native hardware dynamics to emulate complex quantum systems with great efficiency by bypassing the quantum circuit abstraction. However, conventional compilation methods for analog simulators are…

Quantum Physics · Physics 2025-07-01 Junyu Zhou , Yuhao Liu , Shize Che , Anupam Mitra , Efekan Kökcü , Ermal Rrapaj , Costin Iancu , Gushu Li