Related papers: A Robust and Precise ConvNet for small non-coding …
Background: RNA exhibits a variety of structural configurations. Here we consider a structure to be tantamount to the noncrossing Watson-Crick and \pairGU-base pairings (secondary structure) and additional cross-serial base pairs. These…
In this paper, we present an ultra lightweight system that can effectively recognize different circuit components in an image with very limited training data. Along with the system, we also release the data set we created for the task. A…
Since convolutional neural network (CNN) lacks an inherent mechanism to handle large scale variations, we always need to compute feature maps multiple times for multi-scale object detection, which has the bottleneck of computational cost in…
Convolutional neural networks typically encode an input image into a series of intermediate features with decreasing resolutions. While this structure is suited to classification tasks, it does not perform well for tasks requiring…
Convolutional Neural Networks (CNNs) can provide accurate object classification. They can be extended to perform object detection by iterating over dense or selected proposed object regions. However, the runtime of such detectors scales as…
In this paper, we propose a method for image-set classification based on convex cone models, focusing on the effectiveness of convolutional neural network (CNN) features as inputs. CNN features have non-negative values when using the…
Dense Retrieval (DR) has achieved state-of-the-art first-stage ranking effectiveness. However, the efficiency of most existing DR models is limited by the large memory cost of storing dense vectors and the time-consuming nearest neighbor…
The Recurrent Neural Networks and their variants have shown promising performances in sequence modeling tasks such as Natural Language Processing. These models, however, turn out to be impractical and difficult to train when exposed to very…
Single-cell RNA sequencing (scRNA-seq) data analysis is pivotal for understanding cellular heterogeneity. However, the high sparsity and complex noise patterns inherent in scRNA-seq data present significant challenges for traditional…
Chemical reaction networks (CRNs) are directed graphs with reactant or product complexes as vertices, and reactions as arcs. A CRN is weakly reversible if each of its connected components is strongly connected. Weakly reversible networks…
Automation-assisted cervical screening via Pap smear or liquid-based cytology (LBC) is a highly effective cell imaging based cancer detection tool, where cells are partitioned into "abnormal" and "normal" categories. However, the success of…
Prostate cancer is one of the most common causes of cancer deaths in men. There is a growing demand for noninvasively and accurately diagnostic methods that facilitate the current standard prostate cancer risk assessment in clinical…
Clustering analysis is fundamental in single-cell RNA sequencing (scRNA-seq) data analysis for elucidating cellular heterogeneity and diversity. Recent graph-based scRNA-seq clustering methods, particularly graph neural networks (GNNs),…
This thesis studies how the segmentation results, produced by convolutional neural networks (CNN), is different from each other when applied to small biomedical datasets. We use different architectures, parameters and hyper-parameters,…
Convolutional neural networks (CNNs) depend on deep network architectures to extract accurate information for image super-resolution. However, obtained information of these CNNs cannot completely express predicted high-quality images for…
Convolutional neural networks (CNNs) have received increasing attention over the last few years. They were initially conceived for image categorization, i.e., the problem of assigning a semantic label to an entire input image. In this paper…
The ability to automatically detect certain types of cells or cellular subunits in microscopy images is of significant interest to a wide range of biomedical research and clinical practices. Cell detection methods have evolved from…
This paper proposes a novel saliency detection method by developing a deeply-supervised recurrent convolutional neural network (DSRCNN), which performs a full image-to-image saliency prediction. For saliency detection, the local, global,…
Single-cell RNA sequencing (scRNA-seq) has revolutionized our ability to analyze gene expression at the cellular level. By providing data on gene expression for each individual cell, scRNA-seq generates large datasets with thousands of…
Various architectures (such as GoogLeNets, ResNets, and DenseNets) have been proposed. However, the existing networks usually suffer from either redundancy of convolutional layers or insufficient utilization of parameters. To handle these…