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Chemical-disease relation (CDR) extraction is significantly important to various areas of biomedical research and health care. Nowadays, many large-scale biomedical knowledge bases (KBs) containing triples about entity pairs and their…

Computation and Language · Computer Science 2020-01-03 Huiwei Zhou , Shixian Ning , Yunlong Yang , Zhuang Liu , Chengkun Lang , Yingyu Lin

Automatically extracting the relationships between chemicals and diseases is significantly important to various areas of biomedical research and health care. Biomedical experts have built many large-scale knowledge bases (KBs) to advance…

Computation and Language · Computer Science 2019-12-24 Huiwei Zhou , Yunlong Yang , Shixian Ning , Zhuang Liu , Chengkun Lang , Yingyu Lin , Degen Huang

We investigate the incorporation of character-based word representations into a standard CNN-based relation extraction model. We experiment with two common neural architectures, CNN and LSTM, to learn word vector representations from…

Computation and Language · Computer Science 2018-05-29 Dat Quoc Nguyen , Karin Verspoor

Recently, a considerable literature has grown up around the theme of Graph Convolutional Network (GCN). How to effectively leverage the rich structural information in complex graphs, such as knowledge graphs with heterogeneous types of…

Machine Learning · Computer Science 2021-04-26 Donghan Yu , Yiming Yang , Ruohong Zhang , Yuexin Wu

The goal of representation learning of knowledge graph is to encode both entities and relations into a low-dimensional embedding spaces. Many recent works have demonstrated the benefits of knowledge graph embedding on knowledge graph…

Artificial Intelligence · Computer Science 2019-10-11 Wenqiang Liu , Hongyun Cai , Xu Cheng , Sifa Xie , Yipeng Yu , Hanyu Zhang

Contextually Guided Convolutional Neural Networks (CG-CNNs) employ self-supervision and contextual information to develop transferable features across diverse domains, including visual, tactile, temporal, and textual data. This work…

Computer Vision and Pattern Recognition · Computer Science 2024-10-25 Olcay Kursun , Ahmad Patooghy , Peyman Poursani , Oleg V. Favorov

Literature-based knowledge discovery process identifies the important but implicit relations among information embedded in published literature. Existing techniques from Information Retrieval and Natural Language Processing attempt to…

Social and Information Networks · Computer Science 2019-11-12 Nazim Choudhury , Fahim Faisal , Matloob Khushi

The extraction of chemical-gene relations plays a pivotal role in understanding the intricate interactions between chemical compounds and genes, with significant implications for drug discovery, disease understanding, and biomedical…

Computation and Language · Computer Science 2026-02-05 Mai H. Nguyen , Shibani Likhite , Jiawei Tang , Darshini Mahendran , Bridget T. McInnes

Graph Convolutional Networks (GCNs) have recently been shown to be quite successful in modeling graph-structured data. However, the primary focus has been on handling simple undirected graphs. Multi-relational graphs are a more general and…

Machine Learning · Computer Science 2020-01-22 Shikhar Vashishth , Soumya Sanyal , Vikram Nitin , Partha Talukdar

The widespread availability of electronic health records (EHRs) promises to usher in the era of personalized medicine. However, the problem of extracting useful clinical representations from longitudinal EHR data remains challenging. In…

Machine Learning · Computer Science 2017-01-27 Zhengping Che , Yu Cheng , Zhaonan Sun , Yan Liu

Relation Extraction is a way of obtaining the semantic relationship between entities in text. The state-of-the-art methods use linguistic tools to build a graph for the text in which the entities appear and then a Graph Convolutional…

Computation and Language · Computer Science 2020-08-28 Sunil Kumar Sahu , Derek Thomas , Billy Chiu , Neha Sengupta , Mohammady Mahdy

Knowledge graphs often suffer from incompleteness issues, which can be alleviated through information completion. However, current state-of-the-art deep knowledge convolutional embedding models rely on external convolution kernels and…

Computation and Language · Computer Science 2025-06-13 Wenbin Guo , Zhao Li , Xin Wang , Zirui Chen , Jun Zhao , Jianxin Li , Ye Yuan

In recent years extracting relevant information from biomedical and clinical texts such as research articles, discharge summaries, or electronic health records have been a subject of many research efforts and shared challenges. Relation…

Computation and Language · Computer Science 2016-07-01 Sunil Kumar Sahu , Ashish Anand , Krishnadev Oruganty , Mahanandeeshwar Gattu

Twisted Convolutional Networks (TCNs) are proposed as a novel deep learning architecture for classifying one-dimensional data with arbitrary feature order and minimal spatial relationships. Unlike conventional Convolutional Neural Networks…

Computer Vision and Pattern Recognition · Computer Science 2025-12-09 Junbo Jacob Lian , Haoran Chen , Kaichen Ouyang , Yujun Zhang , Rui Zhong , Huiling Chen

To alleviate sparsity and cold start problem of collaborative filtering based recommender systems, researchers and engineers usually collect attributes of users and items, and design delicate algorithms to exploit these additional…

Information Retrieval · Computer Science 2019-04-30 Hongwei Wang , Miao Zhao , Xing Xie , Wenjie Li , Minyi Guo

Knowledge graphs are freely aggregated, published, and edited in the Web of data, and thus may overlap. Hence, a key task resides in aligning (or matching) their content. This task encompasses the identification, within an aggregated…

Machine Learning · Computer Science 2021-10-22 Pierre Monnin , Chedy Raïssi , Amedeo Napoli , Adrien Coulet

The advent of multi-domain and multi-requirement digital services requires an underlying network ecosystem able to understand service-specific contexts. In this work, we propose Knowledge Centric Networking (KCN), a paradigm in which…

Networking and Internet Architecture · Computer Science 2020-06-04 Marinos Charalambides , Daphne Tuncer , Ning Wang , George Pavlou

In the creation of a smart future information society, Internet of Things (IoT) and Content Centric Networking (CCN) break two key barriers for both the front-end sensing and back-end networking. However, we still observe the missing piece…

Networking and Internet Architecture · Computer Science 2018-06-26 Dapeng Wu , Zhenjiang Li , Jianping Wang , Yuanqing Zheng , Mo Li , Qiuyuan Huang

Knowledge graphs contain rich semantic relationships related to items and incorporating such semantic relationships into recommender systems helps to explore the latent connections of items, thus improving the accuracy of prediction and…

Information Retrieval · Computer Science 2023-10-26 Jinfeng Zhong , Elsa Negre

Answer selection, which is involved in many natural language processing applications such as dialog systems and question answering (QA), is an important yet challenging task in practice, since conventional methods typically suffer from the…

Computation and Language · Computer Science 2021-04-13 Yang Deng , Yuexiang Xie , Yaliang Li , Min Yang , Wai Lam , Ying Shen
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