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It has been shown that genome spatial structures largely affect both genome activity and DNA function. Knowing this, many researchers are currently attempting to accurately model genome structures. Despite these increased efforts there…

Genomics · Quantitative Biology 2015-07-24 Jackson Nowotny , Avery Wells , Lingfei Xu , Renzhi Cao , Tuan Trieu , Chenfeng He , Jianlin Cheng

Defaults in vascular (VN) and neuronal networks of spinal cord are responsible for serious neurodegenerative pathologies. Because of inadequate investigation tools, the lacking knowledge of the complete fine structure of VN and neuronal…

A patient undergoes multiple examinations in each hospital stay, where each provides different facets of the health status. These assessments include temporal data with varying sampling rates, discrete single-point measurements, therapeutic…

Computer Vision and Pattern Recognition · Computer Science 2025-01-31 Malte Tölle , Mohamad Scharaf , Samantha Fischer , Christoph Reich , Silav Zeid , Christoph Dieterich , Benjamin Meder , Norbert Frey , Philipp Wild , Sandy Engelhardt

Simultaneous functional PET/MR (sf-PET/MR) presents a cutting-edge multimodal neuroimaging technique. It provides an unprecedented opportunity for concurrently monitoring and integrating multifaceted brain networks built by spatiotemporally…

Image and Video Processing · Electrical Eng. & Systems 2024-09-23 Luoyu Wang , Yitian Tao , Qing Yang , Yan Liang , Siwei Liu , Hongcheng Shi , Dinggang Shen , Han Zhang

Vision foundation models like DINOv2 demonstrate remarkable potential in medical imaging despite their origin in natural image domains. However, their design inherently works best for uni-modal image analysis, limiting their effectiveness…

Image and Video Processing · Electrical Eng. & Systems 2025-09-09 Daniel Scholz , Ayhan Can Erdur , Viktoria Ehm , Anke Meyer-Baese , Jan C. Peeken , Daniel Rueckert , Benedikt Wiestler

Recently vision transformers (ViT) have been applied successfully for various tasks in computer vision. However, important questions such as why they work or how they behave still remain largely unknown. In this paper, we propose an…

Computer Vision and Pattern Recognition · Computer Science 2022-10-19 Van-Anh Nguyen , Khanh Pham Dinh , Long Tung Vuong , Thanh-Toan Do , Quan Hung Tran , Dinh Phung , Trung Le

Vision-language models enable the understanding and reasoning of complex traffic scenarios through multi-source information fusion, establishing it as a core technology for autonomous driving. However, existing vision-language models are…

Computer Vision and Pattern Recognition · Computer Science 2025-12-17 Minghui Hou , Wei-Hsing Huang , Shaofeng Liang , Daizong Liu , Tai-Hao Wen , Gang Wang , Runwei Guan , Weiping Ding

We introduce Brain-Inspired Modular Training (BIMT), a method for making neural networks more modular and interpretable. Inspired by brains, BIMT embeds neurons in a geometric space and augments the loss function with a cost proportional to…

Neural and Evolutionary Computing · Computer Science 2023-06-07 Ziming Liu , Eric Gan , Max Tegmark

In the past five years, the use of generative and foundational AI systems has greatly improved the decoding of brain activity. Visual perception, in particular, can now be decoded from functional Magnetic Resonance Imaging (fMRI) with…

Image and Video Processing · Electrical Eng. & Systems 2024-03-15 Yohann Benchetrit , Hubert Banville , Jean-Rémi King

This paper introduces a novel approach in neuromorphic computing, integrating heterogeneous hardware nodes into a unified, massively parallel architecture. Our system transcends traditional single-node constraints, harnessing the neural…

Hardware Architecture · Computer Science 2024-10-02 Murat Isik , Jonathan Naoukin , I. Can Dikmen

Multi-modal brain magnetic resonance imaging (MRI) plays a crucial role in clinical diagnostics by providing complementary information across different imaging modalities. However, a common challenge in clinical practice is missing MRI…

Image and Video Processing · Electrical Eng. & Systems 2025-06-04 Haowen Pang , Weiyan Guo , Chuyang Ye

Recent progress in medical vision-language models (VLMs) has achieved strong performance on image-level text-centric tasks such as report generation and visual question answering (VQA). However, achieving fine-grained visual grounding and…

Computer Vision and Pattern Recognition · Computer Science 2026-01-16 Yang Xing , Jiong Wu , Savas Ozdemir , Ying Zhang , Yang Yang , Wei Shao , Kuang Gong

Background: We previously presented GraphVar as a user-friendly MATLAB toolbox for comprehensive graph analyses of functional brain connectivity. Here we introduce a comprehensive extension of the toolbox allowing users to seamlessly…

Medical Visual Question Answering (Med-VQA) holds significant potential for clinical decision support, yet existing efforts primarily focus on 2D imaging with limited task diversity. This paper presents 3D-RAD, a large-scale dataset…

Computer Vision and Pattern Recognition · Computer Science 2025-10-28 Xiaotang Gai , Jiaxiang Liu , Yichen Li , Zijie Meng , Jian Wu , Zuozhu Liu

Vision transformer (ViT) has been widely applied in many areas due to its self-attention mechanism that help obtain the global receptive field since the first layer. It even achieves surprising performance exceeding CNN in some vision…

Computer Vision and Pattern Recognition · Computer Science 2021-09-28 Hanting Li , Mingzhe Sui , Zhaoqing Zhu , Feng Zhao

The increasing availability of multimodal data across text, tables, and images presents new challenges for developing models capable of complex cross-modal reasoning. Existing methods for Multimodal Multi-hop Question Answering (MMQA) often…

Computer Vision and Pattern Recognition · Computer Science 2025-04-14 Qi Zhi Lim , Chin Poo Lee , Kian Ming Lim , Kalaiarasi Sonai Muthu Anbananthen

In multimodal assistant, where vision is also one of the input modalities, the identification of user intent becomes a challenging task as visual input can influence the outcome. Current digital assistants take spoken input and try to…

Computer Vision and Pattern Recognition · Computer Science 2021-11-02 Alkesh Patel , Joel Ruben Antony Moniz , Roman Nguyen , Nick Tzou , Hadas Kotek , Vincent Renkens

Neuronal network models and corresponding computer simulations are invaluable tools to aid the interpretation of the relationship between neuron properties, connectivity and measured activity in cortical tissue. Spatiotemporal patterns of…

Neurons and Cognition · Quantitative Biology 2022-09-16 Johanna Senk , Corto Carde , Espen Hagen , Torsten W. Kuhlen , Markus Diesmann , Benjamin Weyers

Advances in data collection enable the capture of rich patient-generated data: from passive sensing (e.g., wearables and smartphones) to active self-reports (e.g., cross-sectional surveys and ecological momentary assessments). Although…

Annotating 3D data remains a costly bottleneck for 3D object detection, motivating the development of weakly supervised annotation methods that rely on more accessible 2D box annotations. However, relying solely on 2D boxes introduces…

Computer Vision and Pattern Recognition · Computer Science 2025-09-10 Saad Lahlali , Alexandre Fournier Montgieux , Nicolas Granger , Hervé Le Borgne , Quoc Cuong Pham