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We consider the problem of Named Entity Recognition (NER) on biomedical scientific literature, and more specifically the genomic variants recognition in this work. Significant success has been achieved for NER on canonical tasks in recent…

Computation and Language · Computer Science 2020-06-16 Chaoran Cheng , Fei Tan , Zhi Wei

In this paper, we propose a new strategy for the task of named entity recognition (NER). We cast the task as a query-based machine reading comprehension task: e.g., the task of extracting entities with PER is formalized as answering the…

Computation and Language · Computer Science 2019-11-05 Yuxian Meng , Xiaoya Li , Zijun Sun , Jiwei Li

With the proliferation of models for natural language processing tasks, it is even harder to understand the differences between models and their relative merits. Simply looking at differences between holistic metrics such as accuracy, BLEU,…

Computation and Language · Computer Science 2020-12-10 Jinlan Fu , Pengfei Liu , Graham Neubig

The challenge of recognizing named entities in a given text has been a very dynamic field in recent years. This is due to the advances in neural network architectures, increase of computing power and the availability of diverse labeled…

Computation and Language · Computer Science 2023-01-10 Nasi Jofche , Kostadin Mishev , Riste Stojanov , Milos Jovanovik , Dimitar Trajanov

The field of clinical natural language processing has been advanced significantly since the introduction of deep learning models. The self-supervised representation learning and the transfer learning paradigm became the methods of choice in…

Computation and Language · Computer Science 2020-04-27 Andrey Kormilitzin , Nemanja Vaci , Qiang Liu , Alejo Nevado-Holgado

NER has been traditionally formulated as a sequence labeling task. However, there has been recent trend in posing NER as a machine reading comprehension task (Wang et al., 2020; Mengge et al., 2020), where entity name (or other information)…

Machine Learning · Computer Science 2022-05-13 Anubhav Shrimal , Avi Jain , Kartik Mehta , Promod Yenigalla

The aim of Named Entity Recognition (NER) is to identify references of named entities in unstructured documents, and to classify them into pre-defined semantic categories. NER often aids from added background knowledge in the form of…

Computation and Language · Computer Science 2015-11-24 S. Thenmalar , J. Balaji , T. V. Geetha

Clinical named entity recognition (NER) aims to retrieve important entities within clinical narratives. Recent works have demonstrated that large language models (LLMs) can achieve strong performance in this task. While previous works focus…

Computation and Language · Computer Science 2025-02-21 Reza Averly , Xia Ning

Named Entity Recognition (NER) is a fundamental task in natural language processing. It remains a research hotspot due to its wide applicability across domains. Although recent advances in deep learning have significantly improved NER…

Computation and Language · Computer Science 2025-08-12 Xiaobo Zhang , Congqing He , Ying He , Jian Peng , Dajie Fu , Tien-Ping Tan

Named entity recognition (NER) is an information extraction technique that aims to locate and classify named entities (e.g., organizations, locations,...) within a document into predefined categories. Correctly identifying these phrases…

Computation and Language · Computer Science 2021-12-16 Tran Thi Hong Hanh , Antoine Doucet , Nicolas Sidere , Jose G. Moreno , Senja Pollak

Named-entities are inherently multilingual, and annotations in any given language may be limited. This motivates us to consider polyglot named-entity recognition (NER), where one model is trained using annotated data drawn from more than…

Computation and Language · Computer Science 2020-05-05 David Mueller , Nicholas Andrews , Mark Dredze

Named entity recognition (NER) is one of the tasks in natural language processing that can greatly benefit from the use of external knowledge sources. We propose a named entity recognition framework composed of knowledge-based feature…

Computation and Language · Computer Science 2019-06-07 Sławomir Dadas

Named entity recognition (NER) for identifying proper nouns in unstructured text is one of the most important and fundamental tasks in natural language processing. However, despite the widespread use of NER models, they still require a…

Computation and Language · Computer Science 2020-12-23 Zhifeng Hao , Di Lv , Zijian Li , Ruichu Cai , Wen Wen , Boyan Xu

Neural networks (NNs) have become the state of the art in many machine learning applications, especially in image and sound processing [1]. The same, although to a lesser extent [2,3], could be said in natural language processing (NLP)…

Computation and Language · Computer Science 2019-07-30 Luka Gligic , Andrey Kormilitzin , Paul Goldberg , Alejo Nevado-Holgado

For several purposes in Natural Language Processing (NLP), such as Information Extraction, Sentiment Analysis or Chatbot, Named Entity Recognition (NER) holds an important role as it helps to determine and categorize entities in text into…

Computation and Language · Computer Science 2020-03-24 Thong Nguyen , Duy Nguyen , Pramod Rao

Medical information extraction consists of a group of natural language processing (NLP) tasks, which collaboratively convert clinical text to pre-defined structured formats. Current state-of-the-art (SOTA) NLP models are highly integrated…

Computation and Language · Computer Science 2022-03-09 Enwei Zhu , Qilin Sheng , Huanwan Yang , Jinpeng Li

Named entity recognition (NER) is a fundamental component in many applications, such as Web Search and Voice Assistants. Although deep neural networks greatly improve the performance of NER, due to the requirement of large amounts of…

Computation and Language · Computer Science 2021-06-02 Shining Liang , Ming Gong , Jian Pei , Linjun Shou , Wanli Zuo , Xianglin Zuo , Daxin Jiang

Named entity recognition (NER) is a well-studied task in natural language processing. Traditional NER research only deals with flat entities and ignores nested entities. The span-based methods treat entity recognition as a span…

Computation and Language · Computer Science 2021-07-14 Yongliang Shen , Xinyin Ma , Zeqi Tan , Shuai Zhang , Wen Wang , Weiming Lu

Named Entity Recognition (NER) plays a pivotal role in various Natural Language Processing (NLP) tasks by identifying and classifying named entities (NEs) from unstructured data into predefined categories such as person, organization,…

This paper presents a comprehensive study to efficiently build named entity recognition (NER) systems when a small number of in-domain labeled data is available. Based upon recent Transformer-based self-supervised pre-trained language…

Computation and Language · Computer Science 2021-01-01 Jiaxin Huang , Chunyuan Li , Krishan Subudhi , Damien Jose , Shobana Balakrishnan , Weizhu Chen , Baolin Peng , Jianfeng Gao , Jiawei Han