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Ever since the vision was formulated, the Semantic Web has inspired many generations of innovations. Semantic technologies have been used to share vast amounts of information on the Web, enhance them with semantics to give them meaning, and…

Artificial Intelligence · Computer Science 2025-11-17 Ansgar Scherp , Gerd Groener , Petr Škoda , Katja Hose , Maria-Esther Vidal

This paper addresses the problems of missing reasoning chains and insufficient entity-level semantic understanding in large language models when dealing with tasks that require structured knowledge. It proposes a fine-tuning algorithm…

Computation and Language · Computer Science 2025-08-21 Wuyang Zhang , Yexin Tian , Xiandong Meng , Mengjie Wang , Junliang Du

Structured and unstructured data and facts about drugs, genes, protein, viruses, and their mechanism are spread across a huge number of scientific articles. These articles are a large-scale knowledge source and can have a huge impact on…

Artificial Intelligence · Computer Science 2023-02-24 Md. Rezaul Karim , Lina Molinas Comet , Oya Beyan , Dietrich Rebholz-Schuhmann , Stefan Decker

Data-driven discoveries require identifying relevant data relationships from a sea of complex, unstructured, and heterogeneous scientific data. We propose a hybrid methodology that extracts metadata and leverages scientific domain knowledge…

Geophysics · Physics 2023-04-25 Chahak Mehta , Krishna Kumar

Information on cyber-related crimes, incidents, and conflicts is abundantly available in numerous open online sources. However, processing the large volumes and streams of data is a challenging task for the analysts and experts, and entails…

Cryptography and Security · Computer Science 2022-08-03 Tuomas Takko , Kunal Bhattacharya , Martti Lehto , Pertti Jalasvirta , Aapo Cederberg , Kimmo Kaski

Systematic Literature Reviews aim at investigating current approaches to conclude a research gap or determine a futuristic approach. They represent a significant part of a research activity, from which new concepts stem. However, with the…

Digital Libraries · Computer Science 2022-08-05 Nada Sahlab , Hesham Kahoul , Nasser Jazdi , Michael Weyrich

Increasing amounts of freely available data both in textual and relational form offers exploration of richer document representations, potentially improving the model performance and robustness. An emerging problem in the modern era is fake…

Computation and Language · Computer Science 2022-02-16 Boshko Koloski , Timen Stepišnik-Perdih , Marko Robnik-Šikonja , Senja Pollak , Blaž Škrlj

Wikidata is currently the largest open knowledge graph on the web, encompassing over 120 million entities. It integrates data from various domain-specific databases and imports a substantial amount of content from Wikipedia, while also…

Computation and Language · Computer Science 2026-01-06 Shixiong Zhao , Hideaki Takeda

One of the significant barriers to the training of statistical models on knowledge graphs is the difficulty that scientists have in finding the best input data to address their prediction goal. In addition to this, a key challenge is to…

Artificial Intelligence · Computer Science 2023-11-22 Mattia Fumagalli , Marco Boffo , Daqian Shi , Mayukh Bagchi , Fausto Giunchiglia

The exponential growth of scientific literature requires effective management and extraction of valuable insights. While existing scientific search engines excel at delivering search results based on relational databases, they often neglect…

While deep learning has achieved great success in many fields, one common criticism about deep learning is its lack of interpretability. In most cases, the hidden units in a deep neural network do not have a clear semantic meaning or…

Genomics · Quantitative Biology 2019-06-04 Tianle Ma , Aidong Zhang

The objective of knowledge graph embedding is to encode both entities and relations of knowledge graphs into continuous low-dimensional vector spaces. Previously, most works focused on symbolic representation of knowledge graph with…

Computation and Language · Computer Science 2016-12-14 Jiacheng Xu , Kan Chen , Xipeng Qiu , Xuanjing Huang

Medical deep learning models depend heavily on domain-specific knowledge to perform well on knowledge-intensive clinical tasks. Prior work has primarily leveraged unimodal knowledge graphs, such as the Unified Medical Language System…

Artificial Intelligence · Computer Science 2025-05-26 Xiaochen Wang , Yuan Zhong , Lingwei Zhang , Lisong Dai , Ting Wang , Fenglong Ma

The term life sciences refers to the disciplines that study living organisms and life processes, and include chemistry, biology, medicine, and a range of other related disciplines. Research efforts in life sciences are heavily data-driven,…

Knowledge Graph (KG) completion research usually focuses on densely connected benchmark datasets that are not representative of real KGs. We curate two KG datasets that include biomedical and encyclopedic knowledge and use an existing…

Machine Learning · Computer Science 2021-06-15 Justin Lovelace , Denis Newman-Griffis , Shikhar Vashishth , Jill Fain Lehman , Carolyn Penstein Rosé

Large language models (LLMs) are widely used, but they often generate subtle factual errors, especially in long-form text. These errors are fatal in some specialized domains such as medicine. Existing fact-checking with grounding documents…

Computation and Language · Computer Science 2025-05-29 Yingjian Chen , Haoran Liu , Yinhong Liu , Jinxiang Xie , Rui Yang , Han Yuan , Yanran Fu , Peng Yuan Zhou , Qingyu Chen , James Caverlee , Irene Li

There is a large number of online documents data sources available nowadays. The lack of structure and the differences between formats are the main difficulties to automatically extract information from them, which also has a negative…

The Web today has millions of datasets, and the number of datasets continues to grow at a rapid pace. These datasets are not standalone entities; rather, they are intricately connected through complex relationships. Semantic relationships…

Information Retrieval · Computer Science 2024-08-28 Kate Lin , Tarfah Alrashed , Natasha Noy

Integrating heterogeneous biomedical data including imaging, omics, and clinical records supports accurate diagnosis and personalised care. Graph-based models fuse such non-Euclidean data by capturing spatial and relational structure, yet…

Genomics · Quantitative Biology 2025-05-06 Alireza Sadeghi , Farshid Hajati , Ahmadreza Argha , Nigel H Lovell , Min Yang , Hamid Alinejad-Rokny

Various applications in the areas of computational linguistics and artificial intelligence employ semantic similarity to solve challenging tasks, such as word sense disambiguation, text classification, information retrieval, machine…

Computation and Language · Computer Science 2021-01-11 Mohannad AlMousa , Rachid Benlamri , Richard Khoury