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In this paper, we propose a non-uniform windowed decoder for multi-dimensional spatially-coupled LDPC (MD-SC-LDPC) codes over the binary erasure channel. An MD-SC-LDPC code is constructed by connecting together several SC-LDPC codes into…

Information Theory · Computer Science 2020-05-13 Lev Tauz , Homa Esfahanizadeh , Lara Dolecek

Multiple Instance Learning (MIL) has been widely used in weakly supervised whole slide image (WSI) classification. Typical MIL methods include a feature embedding part, which embeds the instances into features via a pre-trained feature…

Computer Vision and Pattern Recognition · Computer Science 2024-08-02 Peijie Qiu , Pan Xiao , Wenhui Zhu , Yalin Wang , Aristeidis Sotiras

Particle smoothers are SMC (Sequential Monte Carlo) algorithms designed to approximate the joint distribution of the states given observations from a state-space model. We propose dSMC (de-Sequentialized Monte Carlo), a new particle…

Computation · Statistics 2022-02-07 Adrien Corenflos , Nicolas Chopin , Simo Särkkä

This article describes algorithms for the hybrid parallelization and SIMD vectorization of molecular dynamics simulations with short-range forces. The parallelization method combines domain decomposition with a thread-based parallelization…

Materials Science · Physics 2017-09-13 Chris M. Mangiardi , Ralf Meyer

Fast 3D super-resolution imaging is essential for decoding rapidly occurring biological processes. Encoding single molecules to their respective planes enable simultaneous multi-plane super-resolution volume imaging. This saves the…

Biological Physics · Physics 2016-08-04 Partha Pratim Mondal

The decomposition of high-density surface electromyography (HD-sEMG) signals into motor unit discharge patterns has become a powerful tool for investigating the neural control of movement, providing insights into motor neuron recruitment…

Neurons and Cognition · Quantitative Biology 2024-10-22 Agnese Grison , Irene Mendez Guerra , Alexander Kenneth Clarke , Silvia Muceli , Jaime Ibanez Pereda , Dario Farina

A fully parallel version of the contact dynamics (CD) method is presented in this paper. For large enough systems, 100% efficiency has been demonstrated for up to 256 processors using a hierarchical domain decomposition with dynamic load…

Soft Condensed Matter · Physics 2015-03-19 Zahra Shojaaee , M. Reza Shaebani , Lothar Brendel , János Török , Dietrich E. Wolf

The growing interest in the dynamical properties of colloidal suspensions, both in equilibrium and under an external drive such as shear or pressure flow, requires the development of accurate methods to correctly include hydrodynamic…

Soft Condensed Matter · Physics 2019-11-11 José Ruiz-Franco , Diego Jaramillo-Cano , Manuel Camargo , Christos N. Likos , Emanuela Zaccarelli

Recently spatial pyramid matching (SPM) with scale invariant feature transform (SIFT) descriptor has been successfully used in image classification. Unfortunately, the codebook generation and feature quantization procedures using SIFT…

Computer Vision and Pattern Recognition · Computer Science 2012-10-04 Junlin Hu , Ping Guo

Mode Division Multiplexing (MDM) is a technique used over the past decade in Silicon Photonics (SiPh) to incorporate more data into communication links by employing higher-order transverse electric or transverse magnetic modes. MDM was…

The design of absorbing boundary conditions (ABC) in a numerical simulation is a challenging task. In the best cases, spurious reflections remain for some angles of incidence or at certain wave lengths. In the worst, ABC are not even…

Computational Physics · Physics 2024-09-11 Guillaume Bouchard , Arnaud Beck , Francesco Massimo , Arnd Specka

In the Subspace Clustering with Missing Data (SCMD) problem, we are given a collection of n partially observed d-dimensional vectors. The data points are assumed to be concentrated near a union of low-dimensional subspaces. The goal of SCMD…

Optimization and Control · Mathematics 2023-09-28 Akhilesh Soni , Jeff Linderoth , Jim Luedtke , Daniel Pimentel-Alarcon

Spatially-coupled (SC) codes are a class of low-density parity-check (LDPC) codes that is gaining increasing attention. Multi-dimensional (MD) SC codes are constructed by connecting copies of an SC code via relocations in order to mitigate…

Information Theory · Computer Science 2026-03-30 Ata Tanrıkulu , Mete Yıldırım , Ahmed Hareedy

Advances in single-cell sequencing have enabled high-resolution profiling of diverse molecular modalities, while integrating unpaired multi-omics single-cell data remains challenging. Existing approaches either rely on pair information or…

Quantitative Methods · Quantitative Biology 2026-01-21 Jianle Sun , Chaoqi Liang , Ran Wei , Peng Zheng , Lei Bai , Wanli Ouyang , Hongliang Yan , Peng Ye

Single Domain Generalization (SDG) remains a formidable challenge in the field of machine learning, particularly when models are deployed in environments that differ significantly from their training domains. In this paper, we propose a…

Machine Learning · Computer Science 2025-02-25 Marzi Heidari , Yuhong Guo

Partial differential equations (PDEs) are crucial in modeling diverse phenomena across scientific disciplines, including seismic and medical imaging, computational fluid dynamics, image processing, and neural networks. Solving these PDEs at…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-01-07 George Bisbas , Rhodri Nelson , Mathias Louboutin , Fabio Luporini , Paul H. J. Kelly , Gerard Gorman

A wide range of symbolic analysis and optimization problems can be formalized using polyhedra. Sub-classes of polyhedra, also known as sub-polyhedral domains, are sought for their lower space and time complexity. We introduce the Strided…

Symbolic Computation · Computer Science 2024-07-08 Arjun Pitchanathan , Albert Cohen , Oleksandr Zinenko , Tobias Grosser

The spectral deferred correction (SDC) method is an iterative scheme for computing a higher-order collocation solution to an ODE by performing a series of correction sweeps using a low-order timestepping method. This paper examines a…

Numerical Analysis · Mathematics 2015-10-09 Robert Speck , Daniel Ruprecht , Matthew Emmett , Michael Minion , Matthias Bolten , Rolf Krause

Chordal decomposition techniques are used to reduce large structured positive semidefinite matrix constraints in semidefinite programs (SDPs). The resulting equivalent problem contains multiple smaller constraints on the nonzero blocks (or…

Optimization and Control · Mathematics 2020-09-10 Michael Garstka , Mark Cannon , Paul Goulart

Tensor robust principal component analysis (TRPCA) has received a substantial amount of attention in various fields. Most existing methods, normally relying on tensor nuclear norm minimization, need to pay an expensive computational cost…

Numerical Analysis · Computer Science 2017-12-29 Jonathan Q. Jiang , Michael K. Ng