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We explore the application of graph coloring to biological networks, specifically protein-protein interaction (PPI) networks. First, we find that given similar conditions (i.e. number of nodes, number of links, degree distribution and…

Computational Engineering, Finance, and Science · Computer Science 2010-05-25 Susan Khor

In the List $k$-Coloring problem we are given a graph whose every vertex is equipped with a list, which is a subset of $\{1,\ldots,k\}$. We need to decide if $G$ admits a proper coloring, where every vertex receives a color from its list.…

Combinatorics · Mathematics 2025-09-29 Marta Piecyk , Paweł Rzążewski

Graph representation learning has achieved a remarkable success in many graph-based applications, such as node classification, link prediction, and community detection. These models are usually designed to preserve the vertex information at…

Social and Information Networks · Computer Science 2020-01-22 Kangfei Zhao , Yu Rong , Jeffrey Xu Yu , Junzhou Huang , Hao Zhang

This paper presents massively parallel computation (MPC) algorithms in the strongly sublinear memory regime (aka, scalable MPC) for orienting and coloring graphs as a function of its subgraph density. Our algorithms run in $poly(\log\log…

Data Structures and Algorithms · Computer Science 2026-03-12 Mohsen Ghaffari , Christoph Grunau

The distributed coloring problem is arguably one of the key problems studied in the area of distributed graph algorithms. The most standard variant of the problem asks for a proper vertex coloring of a graph with $\Delta+1$ colors, where…

Distributed, Parallel, and Cluster Computing · Computer Science 2026-05-05 Marc Fuchs , Fabian Kuhn

The problem of counting occurrences of query graphs in a large data graph, known as subgraph counting, is fundamental to several domains such as genomics and social network analysis. Many important special cases (e.g. triangle counting)…

Distributed, Parallel, and Cluster Computing · Computer Science 2016-04-05 Venkatesan T. Chakaravarthy , Michael Kapralov , Prakash Murali , Fabrizio Petrini , Xinyu Que , Yogish Sabharwal , Baruch Schieber

In this paper, we give list coloring variants of simple iterative defective coloring algorithms. Formally, in a list defective coloring instance, each node $v$ of a graph is given a list $L_v$ of colors and a list of allowed defects…

Data Structures and Algorithms · Computer Science 2026-05-06 Marc Fuchs , Fabian Kuhn

We resolve a number of long-standing open problems in online graph coloring. More specifically, we develop tight lower bounds on the performance of online algorithms for fundamental graph classes. An important contribution is that our…

Data Structures and Algorithms · Computer Science 2017-07-04 Susanne Albers , Sebastian Schraink

Balanced partitioning is often a crucial first step in solving large-scale graph optimization problems, e.g., in some cases, a big graph can be chopped into pieces that fit on one machine to be processed independently before stitching the…

Distributed, Parallel, and Cluster Computing · Computer Science 2015-12-10 Kevin Aydin , MohammadHossein Bateni , Vahab Mirrokni

Graph coloring involves assigning colors to the vertices of a graph such that two vertices linked by an edge receive different colors. Graph coloring problems are general models that are very useful to formulate many relevant applications…

Machine Learning · Computer Science 2020-10-27 Olivier Goudet , Béatrice Duval , Jin-Kao Hao

Graph drawing research traditionally focuses on producing geometric embeddings of graphs satisfying various aesthetic constraints. After the geometric embedding is specified, there is an additional step that is often overlooked or ignored:…

Computational Geometry · Computer Science 2007-05-23 Michael B. Dillencourt , David Eppstein , Michael T. Goodrich

The state-of-the-art coding schemes for topological interference management (TIM) problems are usually handcrafted for specific families of network topologies, relying critically on experts' domain knowledge. This inevitably restricts the…

Information Theory · Computer Science 2023-05-15 Zhiwei Shan , Xinping Yi , Han Yu , Chung-Shou Liao , Shi Jin

In this paper we present a deterministic CONGEST algorithm to compute an $O(k\Delta)$-vertex coloring in $O(\Delta/k)+\log^* n$ rounds, where $\Delta$ is the maximum degree of the network graph and $1\leq k\leq O(\Delta)$ can be freely…

Data Structures and Algorithms · Computer Science 2023-02-28 Yannic Maus

The application of large language models (LLMs) to graph data has attracted a lot of attention recently. LLMs allow us to use deep contextual embeddings from pretrained models in text-attributed graphs, where shallow embeddings are often…

Artificial Intelligence · Computer Science 2025-02-19 Shima Khoshraftar , Niaz Abedini , Amir Hajian

Graph coloring problems are among the most fundamental problems in parallel and distributed computing, and have been studied extensively in both settings. In this context, designing efficient deterministic algorithms for these problems has…

Data Structures and Algorithms · Computer Science 2024-04-26 Sam Coy , Artur Czumaj , Peter Davies , Gopinath Mishra

A streaming algorithm is considered to be adversarially robust if it provides correct outputs with high probability even when the stream updates are chosen by an adversary who may observe and react to the past outputs of the algorithm. We…

Data Structures and Algorithms · Computer Science 2021-09-24 Amit Chakrabarti , Prantar Ghosh , Manuel Stoeckl

Graph coloring is one of the most famous computational problems with applications in a wide range of areas such as planning and scheduling, resource allocation, and pattern matching. So far coloring problems are mostly studied on static…

Discrete Mathematics · Computer Science 2019-06-12 George B. Mertzios , Hendrik Molter , Viktor Zamaraev

Partitioning a graph into blocks of "roughly equal" weight while cutting only few edges is a fundamental problem in computer science with a wide range of applications. In particular, the problem is a building block in applications that…

Data Structures and Algorithms · Computer Science 2021-05-06 Lars Gottesbüren , Tobias Heuer , Peter Sanders , Christian Schulz , Daniel Seemaier

Graph embedding aims to transfer a graph into vectors to facilitate subsequent graph analytics tasks like link prediction and graph clustering. Most approaches on graph embedding focus on preserving the graph structure or minimizing the…

Machine Learning · Computer Science 2020-03-04 Shirui Pan , Ruiqi Hu , Sai-fu Fung , Guodong Long , Jing Jiang , Chengqi Zhang

We study the graph coloring problem over random graphs of finite average connectivity $c$. Given a number $q$ of available colors, we find that graphs with low connectivity admit almost always a proper coloring whereas graphs with high…

Statistical Mechanics · Physics 2009-11-07 R. Mulet , A. Pagnani , M. Weigt , R. Zecchina
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