Related papers: Periodic words, common subsequences and frogs
We present an algorithm that takes an unannotated corpus as its input, and returns a ranked list of probable morphologically related pairs as its output. The algorithm tries to discover morphologically related pairs by looking for pairs…
A double occurrence word $w$ over a finite alphabet $\Sigma$ is a word in which each alphabet letter appears exactly twice. Such words arise naturally in the study of topology, graph theory, and combinatorics. Recently, double occurrence…
We study the dynamic membership problem for regular languages: fix a language L, read a word w, build in time O(|w|) a data structure indicating if w is in L, and maintain this structure efficiently under letter substitutions on w. We…
Background: Zipf's discovery that word frequency distributions obey a power law established parallels between biological and physical processes, and language, laying the groundwork for a complex systems perspective on human communication.…
We introduce the task of out-of-order membership to a formal language L, where the letters of a word w are revealed one by one in an adversarial order. The length |w| is known in advance, but the content of w is streamed as pairs (i, w[i]),…
The Longest Common Subsequence Problem (LCS) deals with finding the longest subsequence among a given set of strings. The LCS problem is an NP-hard problem which makes it a target for lots of effort to find a better solution with heuristics…
A finite word $w$ is called \emph{rich} if it contains $\vert w\vert+1$ distinct palindromic factors including the empty word. For every finite rich word $w$ there are distinct nonempty palindromes $w_1, w_2,\dots,w_p$ such that…
The similarity between a pair of time series, i.e., sequences of indexed values in time order, is often estimated by the dynamic time warping (DTW) distance, instead of any in the well-studied family of measures including the longest common…
A palindromic periodicity is a factor of an infinite word $(ps)^\omega$ where $p$ and $s$ are palindromes and the factor has length at least $|ps|$, for example, $accabaccab$. In this paper we describe several ways in which a palindromic…
The Shortest Common Supersequence problem (SCS for short) consists in finding a shortest common supersequence of a finite set of words on a fixed alphabet Sigma. It is well-known that its decision version denoted [SR8] in [Garey and…
Consider two random strings having the same length and generated by an iid sequence taking its values uniformly in a fixed finite alphabet. Artificially place a long constant block into one of the strings, where a constant block is a…
A compressed self-index stores a string in compressed form while supporting locate queries without decompression. For highly repetitive strings (arising in web crawls, versioned documents, and genomic collections), static self-indexes can…
A pattern $\alpha$ is a string of variables and terminal letters. We say that $\alpha$ matches a word $w$, consisting only of terminal letters, if $w$ can be obtained by replacing the variables of $\alpha$ by terminal words. The matching…
We investigate the problem of percolation of words in a random environment. To each vertex, we independently assign a letter $0$ or $1$ according to Bernoulli r.v.'s with parameter $p$. The environment is the resulting graph obtained from…
Longest common extension queries (often called longest common prefix queries) constitute a fundamental building block in multiple string algorithms, for example computing runs and approximate pattern matching. We show that a sequence of $q$…
In this paper, we consider a generalized longest common subsequence problem, the string-excluding constrained LCS problem. For the two input sequences $X$ and $Y$ of lengths $n$ and $m$, and a constraint string $P$ of length $r$, the…
In this paper, we consider a generalized longest common subsequence problem with multiple substring exclusion constrains. For the two input sequences $X$ and $Y$ of lengths $n$ and $m$, and a set of $d$ constrains $P=\{P_1,...,P_d\}$ of…
In this work, we consider a variant of the classical Longest Common Subsequence problem called Doubly-Constrained Longest Common Subsequence (DC-LCS). Given two strings s1 and s2 over an alphabet A, a set C_s of strings, and a function Co…
A classical measure of string comparison is given by the longest common subsequence (LCS) problem on a pair of strings. We consider its generalisation, called the semi-local LCS problem, which arises naturally in many string-related…
Dynamic Time Warping (DTW) is a widely used similarity measure for comparing strings that encode time series data, with applications to areas including bioinformatics, signature verification, and speech recognition. The standard…