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A metric graph is a 1-dimensional stratified metric space consisting of vertices and edges or loops glued together. Metric graphs can be naturally used to represent and model data that take the form of noisy filamentary structures, such as…

Statistics Theory · Mathematics 2014-02-10 Fabrizio Lecci , Alessandro Rinaldo , Larry Wasserman

Computational topology is an area that revisits topological problems from an algorithmic point of view, and develops topological tools for improved algorithms. We survey results in computational topology that are concerned with graphs drawn…

Computational Geometry · Computer Science 2017-09-06 Éric Colin de Verdière

We present a method for computing the topological entropy of one-dimensional maps. As an approximation scheme, the algorithm converges rapidly and provides both upper and lower bounds.

chao-dyn · Physics 2009-10-22 N. J. Balmforth , E. A. Spiegel , C. Tresser

Random geometric graphs are random graph models defined on metric spaces. Such a model is defined by first sampling points from a metric space and then connecting each pair of sampled points with probability that depends on their distance,…

Machine Learning · Computer Science 2026-04-10 Han Huang , Pakawut Jiradilok , Elchanan Mossel

Graph embeddings have become a key and widely used technique within the field of graph mining, proving to be successful across a broad range of domains including social, citation, transportation and biological. Graph embedding techniques…

Machine Learning · Computer Science 2018-06-21 Stephen Bonner , Ibad Kureshi , John Brennan , Georgios Theodoropoulos , Andrew Stephen McGough , Boguslaw Obara

Random geometric graphs are random graph models defined on metric measure spaces. A random geometric graph is generated by first sampling points from a metric space and then connecting each pair of sampled points independently with a…

Probability · Mathematics 2025-11-10 Han Huang , Pakawut Jiradilok , Elchanan Mossel

Graph embeddings have emerged as a powerful tool for representing complex network structures in a low-dimensional space, enabling the use of efficient methods that employ the metric structure in the embedding space as a proxy for the…

Social and Information Networks · Computer Science 2024-04-18 Radosław Nowak , Adam Małkowski , Daniel Cieślak , Piotr Sokół , Paweł Wawrzyński

Topological metrics of graphs provide a natural way to describe the prominent features of various types of networks. Graph metrics describe the structure and interplay of graph edges and have found applications in many scientific fields. In…

Data Structures and Algorithms · Computer Science 2018-06-21 Loukianos Spyrou , Javier Escudero

We study finite graphs embedded in oriented surfaces by associating a polynomial to it. The tools used in developing a theory of such graph polynomials are algebraic topological while the polynomial itself is inspired from ideas arising in…

Combinatorics · Mathematics 2022-05-02 Somnath Basu , Dhruv Bhasin , Siddhartha Lal , Siddhartha Patra

The persistence diagram (PD) is an increasingly popular topological descriptor. By encoding the size and prominence of topological features at varying scales, the PD provides important geometric and topological information about a space.…

Graph reconstruction can efficiently detect the underlying topology of massive networks such as the Internet. Given a query oracle and a set of nodes, the goal is to obtain the edge set by performing as few queries as possible. An algorithm…

Data Structures and Algorithms · Computer Science 2024-07-29 Clara Stegehuis , Lotte Weedage

In this work, we study the computability of topological graphs, which are obtained by gluing arcs and rays together at their endpoints. We prove that every semicomputable graph in a computable metric space can be approximated, with…

Logic in Computer Science · Computer Science 2026-04-15 Vedran Čačić , Matea Čelar , Marko Horvat , Zvonko Iljazović

Given partial measurements of a time-varying graph signal, we propose an algorithm to simultaneously estimate both the underlying graph topology and the missing measurements. The proposed algorithm operates by training an interpretable…

Signal Processing · Electrical Eng. & Systems 2024-07-17 Subbareddy Batreddy , Pushkal Mishra , Yaswanth Kakarla , Aditya Siripuram

Discrete Morse theory has recently been applied in metric graph reconstruction from a given density function concentrated around an (unknown) underlying embedded graph. We propose a new noise model for the density function to reconstruct a…

Computational Geometry · Computer Science 2019-12-02 Brittany Terese Fasy , Sushovan Majhi , Carola Wenk

Embedding graphs in a geographical or latent space, i.e.\ inferring locations for vertices in Euclidean space or on a smooth manifold or submanifold, is a common task in network analysis, statistical inference, and graph visualization. We…

Computational Geometry · Computer Science 2022-05-18 Varsha Dani , Josep Díaz , Thomas P. Hayes , Cristopher Moore

Graph embeddings deal with injective maps from a given simple, undirected graph $G=(V,E)$ into a metric space, such as $\mathbb{R}^n$ with the Euclidean metric. This concept is widely studied in computer science, see \cite{ge1}, but also…

Combinatorics · Mathematics 2022-05-04 Dominic van der Zypen

We consider the problem of estimating the topology of multiple networks from nodal observations, where these networks are assumed to be drawn from the same (unknown) random graph model. We adopt a graphon as our random graph model, which is…

Machine Learning · Statistics 2022-02-14 Madeline Navarro , Santiago Segarra

We present a new approach, the Topograph, which reconstructs underlying physics processes, including the intermediary particles, by leveraging underlying priors from the nature of particle physics decays and the flexibility of message…

High Energy Physics - Phenomenology · Physics 2023-10-16 Lukas Ehrke , John Andrew Raine , Knut Zoch , Manuel Guth , Tobias Golling

In machine learning, graph embedding algorithms seek low-dimensional representations of the input network data, thereby allowing for downstream tasks on compressed encodings. Recently, within the framework of network renormalization,…

Physics and Society · Physics 2025-08-29 Riccardo Milocco , Fabian Jansen , Diego Garlaschelli

Hypergraph is a topological model for networks. In order to study the topology of hypergraphs, the homology of the associated simplicial complexes and the embedded homology have been invented. In this paper, we give some algorithms to…

Algebraic Topology · Mathematics 2018-01-03 Shiquan Ren , Chengyuan Wu , Stephane Bressan , Jie Wu
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