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Discovery gene-disease links is important in biology and medicine areas, enabling disease identification and drug repurposing. Machine learning approaches accelerate this process by leveraging biological knowledge represented in ontologies…

Machine Learning · Computer Science 2025-04-14 Catarina Canastra , Cátia Pesquita

Current graph representation learning techniques use Graph Neural Networks (GNNs) to extract features from dataset embeddings. In this work, we examine the quality of these embeddings and assess how changing them can affect the accuracy of…

Machine Learning · Computer Science 2022-11-30 S. Purchase , A. Zhao , R. D. Mullins

Representing words by vectors, or embeddings, enables computational reasoning and is foundational to automating natural language tasks. For example, if word embeddings of similar words contain similar values, word similarity can be readily…

Computation and Language · Computer Science 2022-02-02 Carl Allen

One of the prime problems of computer science and machine learning is to extract information efficiently from large-scale, heterogeneous data. Text data, with its syntax, semantics, and even hidden information content, possesses an…

Computation and Language · Computer Science 2024-09-10 Sarmad N. Mohammed , Semra Gündüç

Over the last years, word and sentence embeddings have established as text preprocessing for all kinds of NLP tasks and improved the performances significantly. Unfortunately, it has also been shown that these embeddings inherit various…

Computation and Language · Computer Science 2024-09-13 Sarah Schröder , Alexander Schulz , Philip Kenneweg , Robert Feldhans , Fabian Hinder , Barbara Hammer

Clinical word embeddings are extensively used in various Bio-NLP problems as a state-of-the-art feature vector representation. Although they are quite successful at the semantic representation of words, due to the dataset - which…

Computation and Language · Computer Science 2022-08-09 Gizem Sogancioglu , Fabian Mijsters , Amar van Uden , Jelle Peperzak

Text-embedding models often exhibit biases arising from the data on which they are trained. In this paper, we examine a hitherto unexplored bias in text-embeddings: bias arising from the presence of $\textit{names}$ such as persons,…

Computation and Language · Computer Science 2025-02-06 Sahil Manchanda , Pannaga Shivaswamy

Network embedding, which aims to learn low-dimensional representations of nodes, has been used for various graph related tasks including visualization, link prediction and node classification. Most existing embedding methods rely solely on…

Social and Information Networks · Computer Science 2019-08-22 Palash Goyal , Homa Hosseinmardi , Emilio Ferrara , Aram Galstyan

We present a family of novel methods for embedding knowledge graphs into real-valued tensors. These tensor-based embeddings capture the ordered relations that are typical in the knowledge graphs represented by semantic web languages like…

Machine Learning · Computer Science 2022-08-25 Ankur Padia , Kostantinos Kalpakis , Francis Ferraro , Tim Finin

Low-dimensional node embeddings play a key role in analyzing graph datasets. However, little work studies exactly what information is encoded by popular embedding methods, and how this information correlates with performance in downstream…

Machine Learning · Computer Science 2021-02-18 Sudhanshu Chanpuriya , Cameron Musco , Konstantinos Sotiropoulos , Charalampos E. Tsourakakis

Knowledge graphs (KGs) are useful for analyzing social structures, community dynamics, institutional memberships, and other complex relationships across domains from sociology to public health. While recent advances in large language models…

Computation and Language · Computer Science 2025-06-17 Erica Cai , Brendan O'Connor

Learning high-quality node embeddings is a key building block for machine learning models that operate on graph data, such as social networks and recommender systems. However, existing graph embedding techniques are unable to cope with…

Machine Learning · Computer Science 2019-07-18 Avishek Joey Bose , William L. Hamilton

Graph embedding has attracted increasing attention due to its critical application in social network analysis. Most existing algorithms for graph embedding only rely on the typology information and fail to use the copious information in…

Artificial Intelligence · Computer Science 2018-01-18 Guolei Sun , Xiangliang Zhang

We examine the abilities of intrinsic bias metrics of static word embeddings to predict whether Natural Language Processing (NLP) systems exhibit biased behavior. A word embedding is one of the fundamental NLP technologies that represents…

Computation and Language · Computer Science 2024-09-17 Taisei Katô , Yusuke Miyao

Word embedding, which refers to low-dimensional dense vector representations of natural words, has demonstrated its power in many natural language processing tasks. However, it may suffer from the inaccurate and incomplete information…

Computation and Language · Computer Science 2015-06-16 Fei Tian , Bin Gao , Enhong Chen , Tie-Yan Liu

Natural Language Processing (NLP) systems learn harmful societal biases that cause them to amplify inequality as they are deployed in more and more situations. To guide efforts at debiasing these systems, the NLP community relies on a…

Computation and Language · Computer Science 2021-06-09 Seraphina Goldfarb-Tarrant , Rebecca Marchant , Ricardo Muñoz Sanchez , Mugdha Pandya , Adam Lopez

Many text corpora exhibit socially problematic biases, which can be propagated or amplified in the models trained on such data. For example, doctor cooccurs more frequently with male pronouns than female pronouns. In this study we (i)…

Computation and Language · Computer Science 2019-04-08 Shikha Bordia , Samuel R. Bowman

Rule mining on knowledge graphs allows for explainable link prediction. Contrarily, embedding-based methods for link prediction are well known for their generalization capabilities, but their predictions are not interpretable. Several…

Artificial Intelligence · Computer Science 2024-06-17 N'Dah Jean Kouagou , Arif Yilmaz , Michel Dumontier , Axel-Cyrille Ngonga Ngomo

In this thesis, we study the problem of feature learning on heterogeneous knowledge graphs. These features can be used to perform tasks such as link prediction, classification and clustering on graphs. Knowledge graphs provide rich…

Machine Learning · Computer Science 2018-09-11 Sebastian Bischoff

Learning low-dimensional embeddings of knowledge graphs is a powerful approach used to predict unobserved or missing edges between entities. However, an open challenge in this area is developing techniques that can go beyond simple edge…

Social and Information Networks · Computer Science 2019-10-30 William L. Hamilton , Payal Bajaj , Marinka Zitnik , Dan Jurafsky , Jure Leskovec
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