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We present an open-source Thermochemical Equilibrium Abundances (TEA) code that calculates the abundances of gaseous molecular species. The code is based on the methodology of White et al. (1958) and Eriksson (1971). It applies Gibbs…

Instrumentation and Methods for Astrophysics · Physics 2016-07-20 Jasmina Blecic , Joseph Harrington , M. Oliver Bowman

We describe Pegasus, a new hybrid-kinetic particle-in-cell code tailored for the study of astrophysical plasma dynamics. The code incorporates an energy-conserving particle integrator into a stable, second-order--accurate, three-stage…

High Energy Astrophysical Phenomena · Physics 2015-06-17 Matthew W. Kunz , James M. Stone , Xue-Ning Bai

We propose an optimization algorithm to compute the optimal sensor locations in experimental design in the formulation of Bayesian inverse problems, where the parameter-to-observable mapping is described through an integral equation and its…

Computation · Statistics 2019-12-30 Jing Yu , Mihai Anitescu

In its simplest form, a chemostat consists of microorganisms or cells that grow continually in a specific phase of growth while competing for a single limiting nutrient. Under certain conditions of the cell growth rate, substrate…

Numerical Analysis · Mathematics 2023-04-11 Kareem T. Elgindy

The Combustion Toolbox (CT) is a newly developed open-source thermochemical code designed to solve problems involving chemical equilibrium for both gas- and condensed-phase species. The kernel of the code is based on the theoretical…

Chemical Physics · Physics 2026-01-06 Alberto Cuadra , César Huete , Marcos Vera

This study examines the sawtooth crash phenomenon in tokamak plasmas by modelling it as a sequence of Multi-region Relaxed Magnetohydrodynamic (MRxMHD) equilibria. Using the Stepped-Pressure Equilibrium Code (SPEC), we constructed a series…

Plasma Physics · Physics 2025-11-04 Zhisong Qu , Yao Zhou , Arunav Kumar , Joshua Doak , Joaquim Loizu , Matthew Hole

In this paper, we develop an asymptotic-preserving and energy-conserving (APEC) Particle-In-Cell (PIC) algorithm for the Vlasov-Maxwell system. This algorithm not only guarantees that the asymptotic limiting of the discrete scheme is a…

Plasma Physics · Physics 2023-06-14 Lijie Ji , Zhiguo Yang , Zhuoning Li , Dong Wu , Shi Jin , Zhenli Xu

This article presents an overview of quasineutral limits in plasma models. Starting from the Vlasov-Poisson system, it explains the role of the Debye length, the emergence of a kinetic incompressibility constraint, and the stability issues…

Analysis of PDEs · Mathematics 2026-05-28 Mikaela Iacobelli

A new global two-fluid electromagnetic turbulence code, CENTORI, has been developed for the purpose of studying magnetically-confined fusion plasmas on energy confinement timescales. This code is used to evolve the combined system of…

Computational Physics · Physics 2015-05-30 P. J. Knight , A. Thyagaraja , T. D. Edwards , J. Hein , M. Romanelli , K. G. McClements

Computational physics problems often have a common set of aspects to them that any particular numerical code will have to address. Because these aspects are common to many problems, having a framework already designed and ready to use will…

The present paper describes a parallel unstructured-mesh Plasma simulation code based on Finite Volume method. The code dynamically refines and coarses mesh for accurate resolution of the different features regarding the electron density.…

Computational Physics · Physics 2022-12-26 Imad Kissami , Souhail Maazioui , Fayssal Benkhaldoun

A new classical TM stability simulation workflow has been developed that solves the resistive inner-layer equations in a plasma slab to yield a linear, quasi-toroidal TM growth rate $\gamma$ and mode rotation frequency $\omega$. This…

Plasma Physics · Physics 2026-03-13 D. A. Burgess , N. C. Logan , J. -K. Park , C. Paz-Soldan

We present an adaptive Finite State Projection (FSP) method for efficiently solving the Chemical Master Equation (CME) with rigorous error control. Our approach integrates time-stepping with dynamic state-space truncation, balancing…

Computational Engineering, Finance, and Science · Computer Science 2025-04-07 Aditya Dendukuri , Linda Petzold

We present a multiscale model bridging length and time scales from molecular to continuum levels with the objective of predicting the yield behavior of amorphous glassy polyethylene (PE). Constitutive parameters are obtained from molecular…

Computational Physics · Physics 2019-02-06 N. Vu-Bac , P. Areias , T. Rabczuk

We study the problem of computing stationary Nash equilibria in discounted perfect information stochastic games from the viewpoint of computational complexity. For two-player games we prove the problem to be in PPAD, which together with a…

Computer Science and Game Theory · Computer Science 2025-10-14 Kristoffer Arnsfelt Hansen , Xinhao Nie

This paper investigates full stability properties for \emph{variational Nash equilibriums} of a system of parametric nonconvex optimal control problems governed by semilinear elliptic partial differential equations. We first obtain some new…

Optimization and Control · Mathematics 2020-02-21 Nguyen Thanh Qui , Daniel Wachsmuth

The ratio of shear viscosity to entropy density in a strongly coupled CFT plasma can be computed using the AdS/CFT correspondence either from equilibrium correlation functions or from the Janik-Peschanski dual of the boost invariant plasma…

High Energy Physics - Theory · Physics 2008-11-26 Alex Buchel

The 3D quasi-static particle-in-cell (PIC) algorithm is a very efficient method for modeling short-pulse laser or relativistic charged particle beam-plasma interactions. In this algorithm, the plasma response to a non-evolving laser or…

Computational Physics · Physics 2021-02-03 Fei Li , Weiming An , Viktor K. Decyk , Xinlu Xu , Mark J. Hogan , Warren B. Mori

Quantum phase estimation (QPE) serves as a building block of many different quantum algorithms and finds important applications in computational chemistry problems. Despite the rapid development of quantum hardware, experimental…

Quantum Physics · Physics 2024-03-01 Kentaro Yamamoto , Samuel Duffield , Yuta Kikuchi , David Muñoz Ramo

We have developed a new global eigenvalue code, Multiscale Analysis for plasma Stabilities (MAS), for studying plasma problems with wave toroidal mode number n and frequency omega in a broad range of interest in general tokamak geometry,…

Plasma Physics · Physics 2023-06-14 Jian Bao , Wenlu Zhang , Ding Li , Zhihong Lin , Ge Dong , Chang Liu , Huasheng Xie , Guo Meng , Junyi Cheng , Chao Dong , Jintao Cao